UFO02819.5prime Sequence
1128 bp (1027 high quality bases) assembled on 2009-02-18
> UFO02819.5prime
CAGTCGACATGCTAATAAATCATTTAATAGTCGTATTATTAATTAGTTTG
GTAGGAACAGGAGGTGCAGAAGATGACGGACTTTGCAGTGCCGATCAAAA
ATCCTGTGCACAAAGTGAACCCGACCAAATAAACGAGGATGAATTTAGCT
TCAAGATACGTCGCCAGATCGAAAAAGCCAATGCCGACTACAAGCCGTGC
AGCAGTGATCCCCAGGACAGCGACTGCTCCTGCCACGCAAATGTTCTGAA
ACGGGATCTCGCGCCCTACAAGTCAACAGGTGTCACCCGGCAGATGATCG
AGAGTTCAGCGCGTTACGGCACCAAATACAAGATCTACGGACATCGCCTG
TACCGGGATGCCAACTGCATGTTCCCAGCCCGCTGTGAGGGCATTGAACA
CTTCCTGCTGCCGCTGGTGGCTACGCTGCCCGACATGGACTTGATCATCA
ATACCAGGGACTATCCGCAGCTGAATGCGGCGTGGGGTAACGCGGCTGGT
GGTCCCGTCTTCTCCTTCTCCAAGACAAAGGAGTACCGCGACATCATGTA
TCCAGCGTGGACATTCTGGGCCGGAGGACCGGCCACCAAGCTCCATCCTC
GTGGCATTGGACGCTGGGATCAGATGCGCGAGAAGCTGGAGAAGCGAGCG
GCAGCTATACCCTGGTCACAGAAACGCAGTCTGGGCTTCTTTCGCGGTTC
ACGCACCTCGGACGAACGTGATTCTCTTATTCTGCTCTCGCGCCGCAATC
CGGAGCTAGTCGAGGCTCAATACACCAAAAATCAGGGCTGGAAGTCGCCT
ATGATACACTGGACGCACCGGCTGCTGATGAGGTGTCCTTCGAGGACCAC
TGCAAGTACAAGTACTTGTTCAATTTCCGCGGTGTGCCGCCAGTTTCGTC
TGAGCACTTGTTCCTCTGCAAGTCGCTGGTCTTCCATGTGGGCGACGAGT
GCAGAGTTCTCTACGACCAACTAAAGCCCTGGGTGCACTATGTGCCGCTC
AGAGCTACCCCAGTCAGCAGGAGTACGAACACATCTTGTTCTTTTTCAGA
AAACGATGCGCTGGCCAGGGAATCGCTCAGGGTGATTCCGACCTTCATCT
GGGAGACATTGCGCCATGAAGCACACTC
UFO02819.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rumi-RA | 1534 | CG31152-RA | 74..1199 | 9..1125 | 5120 | 97.8 | Plus |
| rumi-RB | 1530 | CG31152-RB | 74..1195 | 9..1125 | 5050 | 97.4 | Plus |
| CG31139-RC | 1308 | CG31139-RC | 857..990 | 860..987 | 205 | 80.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22749368..22750338 | 1105..145 | 4150 | 97.5 | Minus |
| 3R | 32079331 | 3R | 22750389..22750524 | 144..9 | 680 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:11:21 has no hits.
UFO02819.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:58:52 Download gff for
UFO02819.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rumi-RA | 31..1165 | 1..1128 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:05:52 Download gff for
UFO02819.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rumi-RA | 67..1201 | 1..1128 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:40:55 Download gff for
UFO02819.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rumi-RA | 67..1201 | 1..1128 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:40:55 Download gff for
UFO02819.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22749347..22750338 | 145..1128 | 97 | <- | Minus |
| 3R | 22750389..22750531 | 1..144 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:05:52 Download gff for
UFO02819.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18575069..18576060 | 145..1128 | 97 | <- | Minus |
| arm_3R | 18576111..18576253 | 1..144 | 97 | | Minus |
