UFO02821.5prime Sequence
1115 bp (1012 high quality bases) assembled on 2009-02-18
> UFO02821.5prime
CAGTCGACATGGGAATCAAGTTCCTGGAAGTTATCAAACCGTTCTGCAGT
ATACTGCCGGAAATCGCAAAACCGGAGCGCAAGATCCAATTCAGGGAGAA
AGTGCTATGGACTGCGATCACCCTGTTCATCTTCCTGGTGTGCTGCCAGA
TCCCGCTTTTCGGTATCATGAGCTCAGACTCGGCGGATCCCTTCTACTGG
ATCCGTGTGATCCTGGCCTCCAACCGTGGTACGCTCATGGAGCTGGGTAT
CTCGCCCATCGTGACCTCTGGCCTCATTATGCAGCTGCTGGCCGGAGCAA
AGATCATTGAGGTCGGTGATACGCCCAAGGATCGTGCTCTGTTCAACGGT
GCTCAGAAGCTCTTCGGCATGGTGATCACCATTGGTCAGGCCATCGTCTA
TGTGATGACTGGCATGTACGGCGATCCGTCGGAGATCGGCGCCGGTGTCT
GCCTGCTGATCATCATCCAGCTGTTCGCCGCTGGTTTGATTGTGCTGCTG
CTGGACGAGCTCCTGCAGAAGGGCTATGGACTGGGATCGGGAATTTCCCT
GTTCATTGCCACCAACATTTGCGAGACGATTGTGTGGAAGGCATTCAGCC
CCACCACCGTGACGACGGGACGCGGTACCGAGTTCGAGGGCGCTGTGATT
GCCCTGTTCCATCTGATGGCCACCAGGAACGATAAGGTGCGCGCTCTGCG
CGAGGCCTTCTATCGCCAGAACCTGCCCAATCTGATGAACCTGCTGGCCA
CCGTGCTGGTGTTCGCCGTGGTCATATACTTCCAAGGCTTCCGCGTGGAC
CTACCCATCAAGAGCGCCCGTTACCGCGGCCAGTACAGCAGCTATCCCAT
CAAGCTGTTCTACACCTCCAACATTCCCATCATCCTGCAGTCTGCGCTCG
TGTCCAACTTGTACGTCATCTCCCAGATGCTGGCTGTCAAGTTCCAGGGC
ACTTCTCATACCTTCTGGGTGTGTGGGCTGATGTGAGCGGCGCCCGGCTC
GCTCCTATCCCATCGGTGGTCTGTGCTACTATCTTTCGCCCCCAGAGAGA
GCGTGGACACAATCTGACGACCAATCAGCGGTGGCTCTACATTGTCTTCA
TGGTGGCCGTGCGCC
UFO02821.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:03:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sec61alpha-RB | 2128 | CG9539-RB | 246..1364 | 9..1115 | 5115 | 97.9 | Plus |
| Sec61alpha-RA | 2019 | CG9539-RA | 137..1255 | 9..1115 | 5115 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:03:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6478089..6479064 | 1049..82 | 4585 | 98.5 | Minus |
| 2L | 23513712 | 2L | 6480034..6480101 | 83..16 | 340 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:03:51 has no hits.
UFO02821.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:58:51 Download gff for
UFO02821.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sec61alpha-RA | 152..1278 | 1..1115 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:32:00 Download gff for
UFO02821.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sec61alpha-RA | 129..1255 | 1..1115 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:46:30 Download gff for
UFO02821.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sec61alpha-RA | 129..1255 | 1..1115 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:46:30 Download gff for
UFO02821.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6478019..6479062 | 84..1115 | 97 | <- | Minus |
| 2L | 6480034..6480101 | 16..83 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:32:00 Download gff for
UFO02821.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6478019..6479062 | 84..1115 | 97 | <- | Minus |
| arm_2L | 6480034..6480101 | 16..83 | 100 | | Minus |
