UFO02824.5prime Sequence
1043 bp (1028 high quality bases) assembled on 2009-02-18
> UFO02824.5prime
CAGTCGACATGCACAAAACACACCGTCTCACCACCGACAGCCAGTACATG
GAGGTCGAAGGCTTGCTCCAGGCCATGGACATGCCCACCAGCCACGACCC
GGAGGCGGAACTGGAACCGGAGTCCACGTCGCTGTGCCGCCTGAGCCGCT
ACAACGTGACCAACCTGTACGACGGGCCGGCGGGCGGGGGTTCCTCATTG
AGCTCGGGCCGCCAGCGTTGCTACACAATGCCGCATGTGCCACCGCCAGC
GCCGCCCTCCACGCCCACTCTGCTGACCAGCGGGTGCGGCGGCAGCAGCA
ACTCCGTATCCGTCTCCATCTCGCCCACCTGCTCCGCTGGAAGCCATCCC
TTGGATAGCCAAAGTTTGAGCCAGAGCCCCTTGAACCACTTCATCTACGT
AAAGAATGGCAAGAACCTGCGTCGCGAATCGCGCTGCGTCGACTCGGAGC
TGTCAAAGTTATTCAACGTGGTGTCCATCACAAACCGGCTGACGGCTATT
AAGAACCGCAGCAATTCCATTTCGAATTCCAGTGGAATACTCAATGCCTC
GCGCACCATATCGAAGTTAAACGGGGCGACGGCCACCAAGATCTTTAAGA
TTCATCGGGATCCGAAGGAATTTCTGCGCGAAACGGACGAGGATTCCGTG
TCTGCGCCGGAGTACGACGAGGAGGAGGAGGACACGCGCTTCCTTTTCTT
TCGGCGTGCGCGCTTCTCGAGGAGGTACAGTACCGCACGATCCGGCCGGA
AATTTGCGCGAAAGTTCGCCCGATTTGAGCATCATGAGCGCATGGAAACC
ATCGTGGATAGTTTCGATGCAGCAATGAGCTTCAATGATGCAGACACCGC
AAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATA
ATCATAATCATAATCATAATCATAATCACACTAGCCTAGGAGATCCTGGT
CATGACTAGTGCTTGGATTCTCACAATAAAAACGCCCGGCGGCAACCGAG
CGTTCTGAACAAATCAGGATGGAGTTTCTGAGGTCATTACTTG
UFO02824.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:11:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8617-RA | 1328 | CG8617-RA | 84..923 | 9..848 | 4170 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:11:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14356174..14356953 | 848..69 | 3885 | 99.9 | Minus |
| 2R | 25286936 | 2R | 14357135..14357198 | 72..9 | 305 | 98.4 | Minus |
Blast to na_te.dros performed 2014-11-28 21:11:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmir\TRIM | 3111 | Dmir\TRIM DMTRIM 3126bp Derived from X59239 (Rel. 35, Last updated, Version 3). | 2781..2816 | 665..700 | 117 | 80.6 | Plus |
UFO02824.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:05:45 Download gff for
UFO02824.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8617-RA | 87..926 | 9..848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:58:20 Download gff for
UFO02824.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8617-RA | 84..923 | 9..848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:44:37 Download gff for
UFO02824.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8617-RA | 84..923 | 9..848 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:44:37 Download gff for
UFO02824.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14356174..14356950 | 72..848 | 99 | <- | Minus |
| 2R | 14357136..14357198 | 9..71 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:58:20 Download gff for
UFO02824.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10243679..10244455 | 72..848 | 99 | <- | Minus |
| arm_2R | 10244641..10244703 | 9..71 | 98 | | Minus |
