UFO02825.5prime Sequence
1103 bp (1015 high quality bases) assembled on 2009-02-18
> UFO02825.5prime
CAGTCGACATGCCGCCGGAAATGGAGATCATAGTGGGCACCTACGAGGAG
GTCCTGCTGGGCTTCAAGCTCATCAAATCGCCGACTGACGGCTTGACCGA
TTCCGTCAAATTTGAGCTGAAACAGACTTTTGCAGACAGCTCCCATGCAG
GATCCATTACATCGGTGGCCGTGCAGTGGCCTTGGGTGGCCAGTGGCGGT
ACCGACGACAGGATCTTCGTCTACGACATGCGCACGCGGAAACAGTCGCA
GATCATACTCTCGCACGCCGGAAGAGTGAACACACTGAAATTCACACCTG
ACCTGTCGCACTTGCTCTCCGGGAGCGACGATGGCCATATGATCGCCACA
CGCGTGGGCAGCTGGACCAAAGAGGGTGATTGGCAGAAGGCCCATGCCGG
ACAGGCCGTCACCCACATCAGTTGCCATCCCAGCAGCAAGTTGGCCTTAT
CTTTGGGCGGCGACCAGGTGCTGAACACCTGGAATCTGGTCAATGGCCGC
GTCGCCTACAAGACCAATTTAAAGAACAAGGCTACGCTGGGTCTCCAACC
GGGCTGCTTGTCGTGGTCCAAGCAGGGCGATCACTTCACACTTAGCGGTC
CATTGGTTCTGGAGATCTGGGGCATCGAGAACGCTCATGTTATGCGTCGC
ATTGAGATGCCGGCGAAACCCATTTGCATCACCTGGCTGGATGGGAACGA
GTGTTTAACTGGCCTGGACAACGGCAACATTGCCTGGATTTCCCTCAAGG
ACGAGGATGATACACCACCCACCTTCATTCTTGCACACGAGGCAAGGGTC
AAGGCCATCGCCTATCTGAACGAATTACTGGCCACCGTCTCCAGCGCTGG
TGAAATCAAAGTCTGGAAGATCGACATGGAAACGCGCAAGCTGGAGGAGA
TTGCCAGCAGCTTCATGGACTGCCGACCCACCGACTTGGGCCTGCTGGAT
CTCCGCCAGTTCGGCAATGTCCACCGGTGACACGCATTAAGTGGAGGAGA
ACCAAAGGCGAAAGTGAGTCTTGACAAGTGCCAAGCCTGCAGCACCCTCG
GGATTCTGACATCGGTACGAGCAGATGGATCTGGATGCGAAAAAAGAAAG
GAA
UFO02825.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:13:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12608-RA | 1616 | CG12608-RA | 134..1245 | 8..1103 | 5055 | 97.9 | Plus |
| CG9123-RA | 1592 | CG9123-RA | 137..1214 | 8..1074 | 4505 | 95.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:13:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15343733..15344492 | 767..8 | 3800 | 100 | Minus |
| X | 23542271 | X | 15341222..15341981 | 767..8 | 3395 | 96.4 | Minus |
| X | 23542271 | X | 15343283..15343507 | 1056..840 | 680 | 92 | Minus |
| X | 23542271 | X | 15340864..15340996 | 972..840 | 620 | 97.7 | Minus |
| X | 23542271 | X | 15343597..15343673 | 844..768 | 385 | 100 | Minus |
| X | 23542271 | X | 15341087..15341162 | 843..768 | 350 | 97.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:13:08 has no hits.
UFO02825.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:05:45 Download gff for
UFO02825.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12608-RA | 116..1200 | 1..1074 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:07:12 Download gff for
UFO02825.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12608-RA | 127..1211 | 1..1074 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:55 Download gff for
UFO02825.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12608-RA | 127..1211 | 1..1074 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:41:55 Download gff for
UFO02825.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15343733..15344496 | 1..767 | 99 | | Minus |
| X | 15343247..15343502 | 845..1086 | 92 | <- | Minus |
| X | 15343597..15343673 | 768..844 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:07:12 Download gff for
UFO02825.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15237280..15237535 | 845..1086 | 92 | <- | Minus |
| arm_X | 15237630..15237706 | 768..844 | 100 | <- | Minus |
| arm_X | 15237766..15238529 | 1..767 | 99 | | Minus |
