UFO02828.5prime Sequence
1179 bp (1072 high quality bases) assembled on 2009-02-18
> UFO02828.5prime
CAGTCGACATGGCTGAAGCTGTAAAAAATGAAAGTGGCTCCCAACAACGA
CCTTTGGATAGCGGCGGAGGAGGGGGCGCCAGTGGCGGAGGCGGTGTCGC
TGTAGGAGGCGGCTCGGGAATGCCGAAGAGGAAACATCGGCGGGGAAAAA
AATCCAAGATGCAGCCCAAGAAGACCAAGAACCATTATCCGCAGTGGAAA
CTCGATATGTCAACGGGTGCAGGAGCAACGCTGGAGGGGAATCAACGACA
GAATAGCAGAACCAAGCTGGTTCGTTCGCGCTCCTTGCTCGTTCCGTACA
ACACGAACCGCTTCCTAATGGAGGAACACATGTCGGAGCTGCACAAAGAT
GACTCCGACGACAACTGTTTTGGCTCCCAGACCGAAGATCAGGTGCTCTT
CCTTTCCAAGGAGTTCTCCGATGTCTACGAGCGAGCGCGGCTCGAACGTT
TGGAGACGATGAGCAAGCAGGAGCTCATCCAGGAGTGCATGCAAATCGAA
GATCGATATTCGAAGGCCCAGAACATATCCAAGGAGTTTGGAGCCAAATT
ACGAGCGCAGGATGATAAGATTCGCCAACTATCACGTGAGAATCAATTTC
TGCGCACCCACCTCTTGCGCACGTGTTCCGCGACAGCTGGACCAGCGGCA
GCAGCAGCGGCCGCAGCTTCCCCGCCCTCAGCGGTGGCGCCCACTCCCAG
TTCAGCTTGCGAGCTGCAGGCTAGACAACAGCCTCCCCAGCAGCCACAAC
CCACACCCATGGACTCCACCAGCGAGGACAGCGAAAGCGACAGCAGCAGC
ACCACGTCGAGCACCACGTCCACCACTTCCTCGACCAGCAGCGATGGTCA
CGAAATGGGCGTGGCCGGGCTGAACATAGCCAATGGGCATGCCGAGCGGC
ACGAGAGGAGCCGCACCCGCTCCAGGTCTAGATCACCGATCCACCTGAAT
GGTCATGCCAACGAGGAGGAGCGTCAGCGCCTGCTAGATGGAAATCAAAT
GGAGGAGGACGACACTCCAGCGATGTATCCAGCCAGCCGATGCAGTTGTC
AAGGCAGCTTCTAGACCATCGTTTGGGCGCCGGGCCAGGTAAGGGTCTAA
TCTAATCATATCTAATCATATCACACTAAGCTAGGATCTGGCCTTGAACT
TGCTTGATTCCACCAATAAACGGCCGGGG
UFO02828.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:09:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hexim-RA | 1515 | CG3508-RA | 122..1169 | 7..1052 | 5175 | 99.7 | Plus |
Hexim-RB | 1548 | CG3508-RB | 173..1202 | 25..1052 | 5070 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:09:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14659743..14660317 | 30..604 | 2845 | 99.7 | Plus |
3R | 32079331 | 3R | 14660375..14660831 | 598..1052 | 2170 | 99.3 | Plus |
Blast to na_te.dros performed 2014-11-28 23:09:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2328..2541 | 628..845 | 197 | 56.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6743..6822 | 726..804 | 145 | 67.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2439..2551 | 643..760 | 138 | 59.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6762..6870 | 712..816 | 121 | 59.6 | Plus |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 641..784 | 803..654 | 114 | 57 | Minus |
UFO02828.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:58:46 Download gff for
UFO02828.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3508-RA | 113..1170 | 1..1057 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:11:43 Download gff for
UFO02828.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hexim-RA | 113..1170 | 1..1057 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:01:27 Download gff for
UFO02828.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hexim-RA | 116..1173 | 1..1057 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:01:27 Download gff for
UFO02828.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14659744..14660310 | 31..597 | 100 | -> | Plus |
3R | 14660375..14660831 | 598..1052 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:11:43 Download gff for
UFO02828.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10485466..10486032 | 31..597 | 100 | -> | Plus |
arm_3R | 10486097..10486553 | 598..1052 | 99 | == | Plus |