Clone UFO02828 Report

Search the DGRC for UFO02828

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:28
Well:28
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCG3508-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO02828.5prime Sequence

1179 bp (1072 high quality bases) assembled on 2009-02-18

> UFO02828.5prime
CAGTCGACATGGCTGAAGCTGTAAAAAATGAAAGTGGCTCCCAACAACGA
CCTTTGGATAGCGGCGGAGGAGGGGGCGCCAGTGGCGGAGGCGGTGTCGC
TGTAGGAGGCGGCTCGGGAATGCCGAAGAGGAAACATCGGCGGGGAAAAA
AATCCAAGATGCAGCCCAAGAAGACCAAGAACCATTATCCGCAGTGGAAA
CTCGATATGTCAACGGGTGCAGGAGCAACGCTGGAGGGGAATCAACGACA
GAATAGCAGAACCAAGCTGGTTCGTTCGCGCTCCTTGCTCGTTCCGTACA
ACACGAACCGCTTCCTAATGGAGGAACACATGTCGGAGCTGCACAAAGAT
GACTCCGACGACAACTGTTTTGGCTCCCAGACCGAAGATCAGGTGCTCTT
CCTTTCCAAGGAGTTCTCCGATGTCTACGAGCGAGCGCGGCTCGAACGTT
TGGAGACGATGAGCAAGCAGGAGCTCATCCAGGAGTGCATGCAAATCGAA
GATCGATATTCGAAGGCCCAGAACATATCCAAGGAGTTTGGAGCCAAATT
ACGAGCGCAGGATGATAAGATTCGCCAACTATCACGTGAGAATCAATTTC
TGCGCACCCACCTCTTGCGCACGTGTTCCGCGACAGCTGGACCAGCGGCA
GCAGCAGCGGCCGCAGCTTCCCCGCCCTCAGCGGTGGCGCCCACTCCCAG
TTCAGCTTGCGAGCTGCAGGCTAGACAACAGCCTCCCCAGCAGCCACAAC
CCACACCCATGGACTCCACCAGCGAGGACAGCGAAAGCGACAGCAGCAGC
ACCACGTCGAGCACCACGTCCACCACTTCCTCGACCAGCAGCGATGGTCA
CGAAATGGGCGTGGCCGGGCTGAACATAGCCAATGGGCATGCCGAGCGGC
ACGAGAGGAGCCGCACCCGCTCCAGGTCTAGATCACCGATCCACCTGAAT
GGTCATGCCAACGAGGAGGAGCGTCAGCGCCTGCTAGATGGAAATCAAAT
GGAGGAGGACGACACTCCAGCGATGTATCCAGCCAGCCGATGCAGTTGTC
AAGGCAGCTTCTAGACCATCGTTTGGGCGCCGGGCCAGGTAAGGGTCTAA
TCTAATCATATCTAATCATATCACACTAAGCTAGGATCTGGCCTTGAACT
TGCTTGATTCCACCAATAAACGGCCGGGG

UFO02828.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:09:13
Subject Length Description Subject Range Query Range Score Percent Strand
Hexim-RA 1515 CG3508-RA 122..1169 7..1052 5175 99.7 Plus
Hexim-RB 1548 CG3508-RB 173..1202 25..1052 5070 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:09:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14659743..14660317 30..604 2845 99.7 Plus
3R 32079331 3R 14660375..14660831 598..1052 2170 99.3 Plus
Blast to na_te.dros performed 2014-11-28 23:09:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2328..2541 628..845 197 56.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6743..6822 726..804 145 67.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2439..2551 643..760 138 59.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6762..6870 712..816 121 59.6 Plus
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 641..784 803..654 114 57 Minus

UFO02828.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:58:46 Download gff for UFO02828.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3508-RA 113..1170 1..1057 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:11:43 Download gff for UFO02828.5prime
Subject Subject Range Query Range Percent Splice Strand
Hexim-RA 113..1170 1..1057 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:01:27 Download gff for UFO02828.5prime
Subject Subject Range Query Range Percent Splice Strand
Hexim-RA 116..1173 1..1057 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:01:27 Download gff for UFO02828.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 14659744..14660310 31..597 100 -> Plus
3R 14660375..14660831 598..1052 99 == Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:11:43 Download gff for UFO02828.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10485466..10486032 31..597 100 -> Plus
arm_3R 10486097..10486553 598..1052 99 == Plus