UFO02830.5prime Sequence
1141 bp (1051 high quality bases) assembled on 2009-02-18
> UFO02830.5prime
CAGTCGACATGTTGAGAGTTTTCGTGATTTTCTCGCTGTTTATAGCGGCC
ATCAATGCCTCTGGCGAATTCACCGTGCTGAACCGTCCCAAGGCAATCAG
TTTCAAGGGCAACGATGCACTGGAAAGCCACTACGTGGGTGATGTACTCT
ACGCTTCCATGGGCAACGCCGTCAGCGGCGATACCAACTGGAACGGACTG
ACCATCAACGATCCCTTCAACCTGGCCAAGGGCGTCATTCTGGTGCATGT
CCAGGGCATTGGTCACGTGACCACCGCCGGCAACGTCAAGACCTACGAGC
TGACAGGCTCCGGAACGGACGCCTCTCTGAACGCCCTGGCCGCCGAACTG
GAGGCAGCCAACGAGCCCGTCTGCGATATTAACTTTGAGCAGTTCGACGA
TGGCGTTCAAGCCTGGAAGTCCTGCTTTGGTGATTTCGAGGCCCCAGCCG
CCAAGCCCACCAAGCACCTGAACCCCTCTCTGCACACCGCTGACAAGCAG
TTCCTCCAGGAGGTTGGATTCATCAACAGTGCCGCCGATCATCTGGCTGA
GATGGCCAAGCCCTCGAATGTCCTGATGCTGCGCGTTTCCGTCGATGGAG
TGGCCAAGGCTCATGGCGAGAAGTCCGTGGCCGTGGAGGAGGCCAACAAA
TTGCTGTCGGCCGCTATCAGCCGCCTGCTTGCTGCCTCCCAGAAGTCCAG
CGACTCGGTTCTGTTTGTCCAGACCACGGAGAAGGACGTGGCAGCATCGC
GTGCCAAGCGTGATACCATTGCCGCTTCCACCACCAATCCCTACAACCTG
GCCGTCTACTACGGCAGCGACTACCCGGTGATCTTCAACATCATCCTGTG
GTTCATGGTCGTCTTCGGACTGTCTCTGCTGGCTATCTGCTACGCCATCG
CTGCCATGGATCCCGGCAGGACTCCATCATTTACCGCATGACCTCTACCC
GCATCAGAGACACGCAAGCTTTCTAGACCATTCGTTTGCGCGCGGGCCCA
GGTAGTGGTCATAATCATATTCATATCATATCATAATCCCACTAGCCTAG
GAGAATCTGTCATGACTAGTGCTGATCTCACAATAAACGCCCGGCGCACG
AACGTCTGGAACAATCCGATGGATTGAAGTCCTATCCTGAA
UFO02830.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:26:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| VhaM8.9-RA | 1468 | CG8444-RA | 88..1036 | 9..956 | 4720 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:26:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9261606..9262158 | 405..956 | 2715 | 99.8 | Plus |
| 3R | 32079331 | 3R | 9260991..9261345 | 52..406 | 1775 | 100 | Plus |
| 3R | 32079331 | 3R | 9260725..9260767 | 9..51 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:26:25 has no hits.
UFO02830.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:58:43 Download gff for
UFO02830.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8444-RA | 85..1045 | 9..970 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:32:17 Download gff for
UFO02830.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| VhaM8.9-RA | 88..1048 | 9..970 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:33 Download gff for
UFO02830.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| VhaM8.9-RA | 88..1048 | 9..970 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:09:33 Download gff for
UFO02830.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9260725..9260767 | 9..51 | 100 | -> | Plus |
| 3R | 9260991..9261343 | 52..404 | 100 | -> | Plus |
| 3R | 9261606..9262158 | 405..956 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:32:17 Download gff for
UFO02830.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5086447..5086489 | 9..51 | 100 | -> | Plus |
| arm_3R | 5086713..5087065 | 52..404 | 100 | -> | Plus |
| arm_3R | 5087328..5087880 | 405..956 | 99 | == | Plus |
