UFO02833.5prime Sequence
1150 bp (1043 high quality bases) assembled on 2009-02-18
> UFO02833.5prime
CAGTCGACATGTCTTCGTCGGCCATTTTCGTTCTGGACGTGAAGGGCAAG
GTGCTGATATCGCGGAACTACCGCGGTGACAACATCGACATGGCCGTGAT
CGACAAATTCATGCCATTGCTGATGGAGCGCGAGGAGGAGGGCCTAATCA
CTCCGATCCTTCAGACGGCGGAGACTACATTTGCCTACATCAAAACGAAC
AATCTTTATATCGTATCCACGACGCCGCGCAATAAGAACGTTAATATCGC
TCTGGTCTTCGTCTTTCTGCACAAGATCGCGCAGGTCTTTGTGGAATACT
TCAAGGAGCTGGAGGAGGAGTCCATTCGGGACAATTTCGTGATCATCTAC
GAGCTGCTGGATGAATTGCTCGACTTTGGCTACCCGCAGACCACCGACTC
GAAAATTCTACAGGAATACATTACGCAGGAGGGTCATAAGCTGGAGCTAC
AGCCCCGCATCCCGGTGGCCGTGACCAATGCAGTATCCTGGCGGTCCGAG
GGCATTAAGTATCGCAAGAACGAGGTGTTCCTGGACGTTATCGAGTCGGT
GAATCTTCTCGCAAACGCCAATGGCAATGTGCTGCGCAGCGAGATCGTGG
GCGCCATTAAGATGCGCGTCTACTTGTCGGGAATGCCAGAGCTGCGACTG
GGTCTCAACGACAAGGTTCTGTTCGAGAGCACGGGCCGCGGCAAGTCAAA
GTCCGTAGAGCTGGAGGACGTCAAGTTCCACCAGTGCGTGCGGTTGTCAC
GCTTCGAGAATGACCGGACAATCTCGTTCATTCCTCCGGACGGCGAGTTC
GAACTGATGTCCTATCGTCTGAACACGCATGTCAAACCCCTGATTTGGAT
CGAATCAGTGATCGAGCGGCATGCCCACTCCCGTGTGGAGTACATGATTA
AGCGAAGTCTCAGTTCAAGCGAAGATCGACGGCCAACAACGTGAAATCGT
CATACCAGTGCCCGCCGACGCGGACTCACCCAAGTTCAGACCACCATTGA
GCTGCAGTACCCACCGGGAGCAGACGCATCATTCTGACGATCAATCCGTT
CCCGGGTGGCCAGGATATCTTATGCGGCACATTCGTCTGGCGAGCGGTGA
AAGCGAAGACCATTCGAGGCAGGCCGCCCAATTCAAGTGTGCTCATCGTG
UFO02833.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:03:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AP-1mu-RA | 1755 | CG9388-RA | 274..1423 | 6..1143 | 5115 | 97.2 | Plus |
| AP-2mu-RC | 1976 | CG7057-RC | 461..525 | 336..400 | 235 | 90.8 | Plus |
| AP-2mu-RB | 2025 | CG7057-RB | 461..525 | 336..400 | 235 | 90.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:03:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9558426..9559252 | 832..6 | 4135 | 100 | Minus |
| 3R | 32079331 | 3R | 9558197..9558368 | 999..831 | 710 | 98.3 | Minus |
| 3R | 32079331 | 3R | 22462983..22463047 | 336..400 | 235 | 90.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:03:48 has no hits.
UFO02833.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:58:41 Download gff for
UFO02833.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AP-47-RA | 267..1358 | 1..1083 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:31:59 Download gff for
UFO02833.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AP-1mu-RA | 269..1360 | 1..1083 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:46:27 Download gff for
UFO02833.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AP-1mu-RA | 269..1360 | 1..1083 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:46:27 Download gff for
UFO02833.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9558123..9558368 | 831..1068 | 93 | <- | Minus |
| 3R | 9558428..9559255 | 1..830 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:31:59 Download gff for
UFO02833.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5383845..5384090 | 831..1068 | 93 | <- | Minus |
| arm_3R | 5384150..5384977 | 1..830 | 99 | | Minus |
