UFO02834.5prime Sequence
1132 bp (1026 high quality bases) assembled on 2009-02-18
> UFO02834.5prime
CAGTCGACATGCAGTCCATTCTGTCTTCAATGAGGGCACTGGCCCTGCGC
CAGAGCACGGTGGAGCCCCTCCGCCTGCTGCATCTTTCCGCCGTGAGCGA
GGCGGCCCGTAAAGGAACTCGGGAGAAGGCCCGCAAGAAGAAAGTCAAGG
TGGAAGTGAAGAAGGTTGGATTCATCCCGCACAACCAGCGCAACAAGAAA
ATCAATGTGAAACGGGCGGACAAACATGTGGATGACTCCTGGAAACAGGT
GCCCAAAGATGACTGCTATGTGGGGCGCTACTACCGCTGGCCAGTGTACT
CGGTGCAGGAAGCTATCCAGTGCCATCGGGAGACGCATCATCCCAGCATG
TACAACGTACCCAATGCTCCCCTCAATTTGGATATTGAACTCAACATGCA
GGCGGAGAAGATCACACGTTTTGTGGATAACTTCCAGCGCATGGCCATGA
TTCCACACAAGTTTGACCACGGCGAGGAGCGGAAGATCATAGTTTTCACC
AAGGGAAATAATGAAGTCCTGGAGGCCAGGGAAGCTGGCGCCTCGCTAGT
CGGCGGCGTGGAGCTCATTAAGGATATTACCAGCGGCGAGCTGCTGCTCT
CCGACTACCAGTACGTCATTGCCCATCCGAATATACTGGCCGAGCTGGTG
GCCCTGCGAGGCCTGATGAAACGCAAGTTCCCAAATCCAAAGAGCGAGAC
GCTGGGCACCAACCTGGCCGAGATGATCGTCAAATTCTCCAGCGGCATTA
GTTACAGTGCAGCCAAGGATGAGTACCAGCAAAACTTTGGCCTGATCACC
GCCAGTGTGGGCACTTTGGACATGGATGTCCAGAAGCTTGAGGAGAACAT
CAAGTTCCTACTGCAGGATATTAACACTATGAGCCCAAGCGCGAGGGACG
TTTCATTACACGTGTCCTGCTGAAGAGCCCGCCAAGCAGTGAGCAGCTGA
AAATCGATCCCTTTGTCTACGTTCCAGAGATGTGGGACAGAGCCACGGCG
AGGTGAAAAGGGATGGGGTCAAGAAGCAGAACGAGCGGCGGACCCAGAGC
GTGCCTCCATGCAAGCTTTCTAGAACAATTCGGTTGGCGCGCGGCCAGTA
AGTGTCCTAATCTATCTAATAATCATAATCTA
UFO02834.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:20:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL1-RA | 1220 | CG7494-RA | 73..1109 | 9..1042 | 5020 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:20:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8302124..8302646 | 510..1030 | 2440 | 98.7 | Plus |
| 3R | 32079331 | 3R | 8301757..8302066 | 200..509 | 1550 | 100 | Plus |
| 3R | 32079331 | 3R | 8301512..8301702 | 9..199 | 955 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:20:14 has no hits.
UFO02834.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:58:50 Download gff for
UFO02834.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL1-RA | 68..1110 | 6..1045 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:56:51 Download gff for
UFO02834.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL1-RA | 70..1112 | 6..1045 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:57:51 Download gff for
UFO02834.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL1-RA | 70..1112 | 6..1045 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:57:51 Download gff for
UFO02834.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8301509..8301702 | 6..199 | 99 | -> | Plus |
| 3R | 8301757..8302066 | 200..509 | 100 | -> | Plus |
| 3R | 8302124..8302646 | 510..1030 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:56:51 Download gff for
UFO02834.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4127479..4127788 | 200..509 | 100 | -> | Plus |
| arm_3R | 4127846..4128368 | 510..1030 | 99 | == | Plus |
| arm_3R | 4127231..4127424 | 6..199 | 99 | -> | Plus |
