UFO02837.5prime Sequence
1129 bp (1043 high quality bases) assembled on 2009-02-18
> UFO02837.5prime
CAGTCGACATGGGAGCAAAGGCAACAAAAATGGAAGGTGAATATCTGCCG
GATACGCCGACACTAAACAAAATGCGCCTGGCCAGCGAAAAGCGAGAACA
AATGGAAATGACGACGCCGAATCGAGAGCAAAACAACGCTTTGCTCGATC
CTCGATCACCAAATGGCTGCCGCACGCCTTTAACCTTCTTGCAGGCGTCA
AAACCTCGCGTTGAGGAGGAGGAGCAGCATGTGACCACCAGTGAAAATGC
CTTCTCCATGCTGCGAAAACGTTTGCTCAAGGGCTTCTCCCTGAACGATC
CTCGCTCTCCTCAGCTGAATCGCACTCCACTGGTCCTCGATGAGGTTCGT
TCGCTTAATATGGATGACACATTCGCCGATCTCTTCGTGGACACCAGGGT
GGGTACAGCACAGAGAGCAGTGCCTGCATCACCGCCCCAAGTGGATTTAG
AGGAGAGCTGCGATAGCTTCGGCACACCGCCGTCTGCTGCACACAACAAT
ATTTCCCTGGAGATTGTTTCACTGCCCTATGATCAGGAAGAAACCTTGCC
TTGCGAGCAACAGCTGCTGCCGTATCAGGAGCCGAATCTGGAGCAGGGCC
AGGTGAAAATGGCCACGCCCCCGCCAGAACAGCAGCCCCATGGTGATCCC
CGATCGCCCAGCCTGGGCGTCGATCGCACACCCATCATCTTCTGCGACGA
CGAGGAGGAGGAGGCACGCGAGGCCCAGATGCTGGAGCACATCCTGGAAA
CACTGACCCTGAATCTCAGCACTGGCAGCAGCATGGCCTCCTTTGTCGCT
GGCGAGGAGCAGCTACCAGAAGTGCCGTCGAACAAACATTTGGAGCGAGT
GCGTTTGGGTCACAAGCGTCGTGTGCCACCGCGCAAGCCCGCCAGAGCCA
ACAAGCCAAGATCTATGTTGACCAGAGAGGGGTCCCGGTGACCGGAGATC
CATTACGCCAGACAAACAGTACCCCCTGTCCGCACAAAGCGACTCACTCA
GTTGCGTTAGATAGCGCATCTGCATCCGTTCATGAATGATTCTAAGAAGA
TCGAATCGCCCGCCCAGAGCTTCACGATCACTGCGATATCTCTGCCGATG
ATTCCACGGACGTAGCAAGCTTCTAGACA
UFO02837.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| msb1l-RA | 1366 | CG10364-RA | 98..1211 | 9..1094 | 4855 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19578040..19578850 | 186..988 | 3695 | 98.8 | Plus |
| 2L | 23513712 | 2L | 19577798..19577974 | 9..185 | 885 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:11:10 has no hits.
UFO02837.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:58:37 Download gff for
UFO02837.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msb1l-RA | 94..1207 | 9..1094 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:05:42 Download gff for
UFO02837.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msb1l-RA | 98..1211 | 9..1094 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:40:47 Download gff for
UFO02837.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msb1l-RA | 98..1211 | 9..1094 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:40:47 Download gff for
UFO02837.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19577798..19577974 | 9..185 | 100 | -> | Plus |
| 2L | 19578040..19578976 | 186..1094 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:05:42 Download gff for
UFO02837.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19577798..19577974 | 9..185 | 100 | -> | Plus |
| arm_2L | 19578040..19578976 | 186..1094 | 96 | | Plus |
