UFO02839.5prime Sequence
1104 bp (976 high quality bases) assembled on 2009-02-18
> UFO02839.5prime
CAGTCGACATGTGCAGCTTGGACGTAAGACGCTTCTTCGAGGAGTGGCGC
ATCTGGATACGCCCGCTGCTCATTATCACCTATGTCATCTTCGCCATCAT
CGTGGTCCCGCTGCTCATTGTGAACTCCGTGAAGGATGGCTTCCAGCGCA
ATGACCAGCTCATTCTCATCGGCGGTCTGTTTGTGTTGTCCGCAGTGCCC
GTGTCCATTTGGCATATCATCCAACACGTCATTCATTTTACCAAGCCCAT
ACTGCAGAAGCACATAATCCGCATATTGTGGATGGTGCCTATCTACGCCT
TGAACGCGTGGATCGGCCTTTTCTTTCCGAAGCACTCCATCTACGTGGAC
TCACTGCGCGAGTGCTACGAGGCGTACGTTATCTACAACTTCATGGTGTA
CCTGCTCAACTACTTGAATCTCGGTATGGACCTAGAGGCCACAATGGAGT
ACAAGCCGCAGGTGCCTCACTTCTTTCCGCTCTGCTGCATGCGGCCGTGG
GTGATGGGTCGTGAATTCATCCACAACTGCAAGCACGGCATCCTCCAGTA
CACGGTCGTGCGCCCCATTACCACCTTTATCTCTGTCATCTGCGAGCTAT
GCGGCGTTTACGGCGAGGGCGAGTTTGCGGGCAACGTGGCCTTCCCCTAT
ATTGTGGTGGTCAACAATATATCCCAGTTCGTGGCCATGTATTGCCTGGT
GCTATTTTACCGTGCAAACAAGGAGGATCTCAAACCAATGAAGCCTATTC
CCAAATTCCTGTGCATCAAGGCTGTGGTGTTTTTCTCGTTTTTCCAAGGA
GTGCTACTCAACGTACTGGTATACTATAATATTATTAAAGACATCTTTGG
GTCGGATGTGGAGACACCATCTGGCTTCCCTGCTTCAAATTTCCTCATCT
GCATCGAAATGTTTATCGCGCGTGCTCACATCTACAGCTTCCGCAGCATC
CGTATCACATCAACTCACGCAGTACTGGACATCCCGAACCATAGCTGGTG
TCCGCTTCCTCTTCATGATGACATATCGAATGCAGGAGGATGTTCACCGA
GCATCTGGGCGTCTGGGCAATCCATGAATCGTCCCTTTCAGAACGCAGCA
ATAC
UFO02839.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5850-RC | 2935 | CG5850-RC | 558..1665 | 9..1100 | 4925 | 97.3 | Plus |
| CG5850-RG | 2744 | CG5850-RG | 364..1471 | 9..1100 | 4925 | 97.3 | Plus |
| CG5850-RF | 2678 | CG5850-RF | 364..1471 | 9..1100 | 4925 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9963093..9963392 | 308..9 | 1500 | 100 | Minus |
| 2L | 23513712 | 2L | 9962735..9963013 | 586..308 | 1395 | 100 | Minus |
| 2L | 23513712 | 2L | 9962471..9962677 | 793..587 | 1035 | 100 | Minus |
| 2L | 23513712 | 2L | 9962319..9962414 | 887..794 | 365 | 96.9 | Minus |
| 2L | 23513712 | 2L | 9961874..9962059 | 1063..888 | 305 | 88.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:11:04 has no hits.
UFO02839.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:58:36 Download gff for
UFO02839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5850-RA | 370..1467 | 2..1083 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:05:37 Download gff for
UFO02839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5850-RF | 356..1453 | 2..1083 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:40:45 Download gff for
UFO02839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5850-RF | 356..1453 | 2..1083 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:40:45 Download gff for
UFO02839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9962318..9962414 | 794..887 | 95 | <- | Minus |
| 2L | 9962471..9962677 | 587..793 | 100 | <- | Minus |
| 2L | 9962735..9963012 | 309..586 | 100 | <- | Minus |
| 2L | 9963093..9963400 | 2..308 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:05:37 Download gff for
UFO02839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9962318..9962414 | 794..887 | 95 | <- | Minus |
| arm_2L | 9962471..9962677 | 587..793 | 100 | <- | Minus |
| arm_2L | 9962735..9963012 | 309..586 | 100 | <- | Minus |
| arm_2L | 9963093..9963400 | 2..308 | 98 | | Minus |
