UFO02840.5prime Sequence
1139 bp (1053 high quality bases) assembled on 2009-02-18
> UFO02840.5prime
CAGTCGACATGGAGAACTTTAAGGGTCTACAAAAATCCCTATACATATGG
ACGGACAGCGCCGACTTGGACAAGCGCGTGGAGCAACTAAAGGCGGCCAC
TGGCGGCGATGTGGCTTTGGAAAATGTGCACCGCCTTTCGTTTTCTTCCT
ATGCCAACTCCAGTTTCGACCTGATTGTGATCGAGTGCGCCCAGCTGACC
GACAGTTACGTAAAACTGCTGCACATGCTGAAACCGAGTGGCAAACTGCA
TTTGGTGTCCTACATCGGTCCGGCGGCTAGTTTGCTGCAGGAGATCAAGC
TATCCGGATTCATAAACTGTCGCGAGGACTCTCCAGATGCTTTGACCGCC
GAGAAGCCTGGCTACGAGACAGGATCCTCAGCCAGGTTGTCATTCGCAAA
GAAGAACGCCAGTGCAGTCAATGTGTGGAAGATAAGCGGTGACGATGAGG
AACTGATCGATGAGGAGGAGCTGCTGGACGAGGAAGACAAACAGAAGCCG
GATCCGGCTGGTCTGCGTGTCTGTAGCACCACGGGCAAGCGCAAGGCGTG
CAAAAACTGCTCCTGCGGGCTGGCCGAGGAATTGGAGACTGAAAAACAGA
GCCAGAAGGCCACCGAGAATGCCAAGTCAAGCTGTGGAAATTGTTATCTC
GGCGACGCCTTCCGCTGCTCCACTTGCCCCTATTTGGGCATGCCCGCCTT
TAAGCCCGGTGAGAAGGTGCAACTGGCCGACAACCTCCTGAAATCCGACA
TTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGT
CATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATC
CTGGTCATGACTAGTGCTTGATTCTCACCAATAAAAACGCCCGGCGGCAA
CCGAGCGTTCTGACAAATCCAGATGGAGTTCTGAGTCATTACTGGATCTA
TCACAGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCCGCCCTGCACT
CATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCGACATGAAGCAATC
AAAACGCATGAATGAACTGATCGCCAGCGCAATCAGCACCTTGTCGCTTG
GCTTATATTTGCCATGGTGAACCGGGGGCAAAGAATGTT
UFO02840.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:44:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CIAPIN1-RA | 2358 | CG4180-RA | 87..830 | 9..752 | 3720 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:44:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15038054..15038550 | 641..145 | 2485 | 100 | Minus |
| 2L | 23513712 | 2L | 15038640..15038775 | 144..9 | 680 | 100 | Minus |
| 2L | 23513712 | 2L | 15037875..15037985 | 752..642 | 555 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:44:03 has no hits.
UFO02840.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:58:36 Download gff for
UFO02840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)35Bg-RA | 75..832 | 1..760 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:37:54 Download gff for
UFO02840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CIAPIN1-RA | 79..836 | 1..760 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:39:13 Download gff for
UFO02840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CIAPIN1-RA | 79..836 | 1..760 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:39:13 Download gff for
UFO02840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15038640..15038783 | 1..144 | 97 | | Minus |
| 2L | 15037869..15037985 | 642..760 | 97 | <- | Minus |
| 2L | 15038054..15038550 | 145..641 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:37:54 Download gff for
UFO02840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15037869..15037985 | 642..760 | 97 | <- | Minus |
| arm_2L | 15038054..15038550 | 145..641 | 100 | <- | Minus |
| arm_2L | 15038640..15038783 | 1..144 | 97 | | Minus |
