UFO02842.5prime Sequence
1141 bp (1013 high quality bases) assembled on 2009-02-18
> UFO02842.5prime
CAGTCGACATGGACTTTATTATGGCAAATACCGGAGCTGGCGGCGGAGTA
GACACACAGGCACAGCTAATGCAGAGTGCCGCTGCAGCCGCAGCAGTGGC
GGCAACAAACGCGGCCGCCGCTCCCGTACAGAATGCAGCCGCCGTGGCGG
CCGCCGCCCAGCTGCAGCAGCAACAGGTGCAACAGGCAATCCTGCAGGTG
CAGCAGCAGCAGACACAGCAAGCGGTGGCCGCGGCCGCTGCCGCAGTGAC
CCAGCAGCTCCAACAGCAACAGCAGGCTGTCGTGGCCCAACAGGCTGTAG
TGCAGCAGCAACAACAGCAGGCGGCGGCAGTGGTGCAACAGGCGGCGGTC
CAACAGGCTGTGGTGCCCCAGCCGCAGCAGGCGCAGCCCAATACGAATGG
CAATGCAGGATCGGGATCGCAAAATGGCAGCAACGGCAGCACGGAGACGC
GCACAAACCTTATTGTCAACTACTTGCCGCAAACAATGACCGAAGACGAG
ATCCGTTCGCTCTTCTCCAGCGTCGGCGAGATTGAGTCGGTGAAGCTGAT
ACGCGACAAGTCGCAGGTCTACATCGATCCTCTCAATCCGCAGGCGCCCA
GCAAGGGCCAAAGTCTGGGCTACGGCTTTGTTAACTATGTCCGGCCGCAA
GATGCCGAGCAGGCTGTTAATGTTCTAAACGGCCTGCGACTGCAGAACAA
AACCATAAAGGTGTCGTTTGCCCGCCCGTCGTCCGATGCCATTAAAGGCG
CCAACCTTTATGTGTCGGGGCTGCCAAAGACGATGACCCAGCAGGAACTG
GAGGCCATCTTCGCACCATTCGGAGCAATAATCACATCGCGCATTCTGCA
GAACGCTGGCAACGATACGCAGACGAAAGGAGTAGCTTTATTCGATTCGA
TAAGCGGGAGGAGGCCACAAGGCTATCATTGCCTTGAACGGTACTACACC
ATCCAGCTGCACAGACCCCATAGTGTAAAATCTCATACGCCCGGCAGCAC
AGTAGATCATCAGCGCAGCTGCCGCTTTCTCAATCCCCACTGGTGCGACG
CATCGAGGAGCGCCCATGCACACACATCAACGTCCTCAGTTAAGACAGGT
CTGATCGATTCACAATGGCGGGGCAATGCTGGACGTATGCT
UFO02842.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:57:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| elav-RA | 2505 | CG4262-RA | 498..1573 | 9..1073 | 5010 | 98.5 | Plus |
| elav-RD | 10506 | CG4262-RD | 498..1573 | 9..1073 | 5010 | 98.5 | Plus |
| elav-RC | 2248 | CG4262-RC | 242..1316 | 10..1073 | 5005 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:57:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 518275..519242 | 975..10 | 4740 | 99.8 | Minus |
| X | 23542271 | X | 12942724..12942810 | 444..530 | 195 | 81.6 | Plus |
Blast to na_te.dros performed 2014-11-28 22:57:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6733..6929 | 128..324 | 264 | 62.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6900 | 159..319 | 264 | 64.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2539 | 159..385 | 252 | 59.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6889 | 191..356 | 216 | 63.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6912 | 241..441 | 188 | 64.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2381..2654 | 56..320 | 169 | 58.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2724..2884 | 169..340 | 158 | 60.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1060..1141 | 251..330 | 151 | 72.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6939 | 219..441 | 150 | 56.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2275..2374 | 216..319 | 139 | 65.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1046..1154 | 214..318 | 138 | 62.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2473 | 203..379 | 134 | 57.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1516..1586 | 259..330 | 123 | 65.3 | Plus |
UFO02842.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:58:34 Download gff for
UFO02842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| elav-RA | 498..1557 | 9..1055 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:12:22 Download gff for
UFO02842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| elav-RD | 498..1557 | 9..1055 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:30:51 Download gff for
UFO02842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| elav-RD | 498..1557 | 9..1055 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:30:51 Download gff for
UFO02842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 518184..519249 | 1..1055 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:12:22 Download gff for
UFO02842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 412217..413282 | 1..1055 | 98 | | Minus |
