UFO02843.5prime Sequence
1093 bp (1001 high quality bases) assembled on 2009-02-18
> UFO02843.5prime
CAGTCGACATGGGATCCAAAGTGGAGCAGCAGTACAAGCTGCTGAATGCG
GAGCTAATGGACCAAGTGCAGAAGCAGCGCTTAGAGATCGGCGAGTACAG
GAAGCGGGTGATATCTTTGGAGCGAGAGATCATGGACATTCGGGAGGAGC
ACGTCCTGCAAAACCATCGCCAGCGCATGGAGAACATCAGTATCGTACGC
AGCCTGATGCTGAGCCTGAACGTGGACTCCGATTCCCTGGCAGTGCGTCA
GGAGCCCGCTCCCGCAGCTCAGATAAACAGACCAAGCGGCCCGCGTCGCA
GCTCCAGGGAAATCTGCAAGGACATGCGACGGACGTGTGCGTTGGCCCGC
ACCACCAGACCAATCTCGCCAAGAAGATCTTCCTCAGTGACCAGTACTGT
ATCGTCCACTAGTCGCCGCTCCAGCGCAGAAGTGCAGTCCGAGGTGGTGA
CCACTAGGATACCAGAGGATAGAAGAGCCAACAAGCCTACACCACCGCCA
CGAAGACCAGCGGAATTAGTGTTTGATGAGGACGACTCGGACGATGATTT
CGACGAAGCAGTAAGCCCCGTGGAGGAGACACAGACTGAGCAAAATGAAG
AGAACAATCGTCTGTTTAGCATTATAGAGGAAAATGGCAGTGAAGGGGAG
TCCACAGACTCGTCATCATCATGCGAGGCCATCTATTGCGACACAACGTT
TGAAAGTAGTCCGCCAAACGCCCAAGTCACCGTCACGCCCAGTGGACGGG
CTCTGCGGGAAGTGGACACCAATATCCCTGTAGCAGTGTCCCTCAGTCGG
GGAAAAGAGACTGGGAAGGGATCATGGTTGGCTATTTCCGTAGCTGTGGA
AGATTCTCCACAGGAGCCAAGCATACAGTGCCCACGACTGGCAGTCACCA
GGCCTAGTCATCGTCTGGATATTTCCTGATGTCAACGGATTACGCGCGAG
AGCTGTCATGGGATAGGCAAAATGGCGGAGCACCAGCACTCCGAAATCCT
TTCCTCGTCGAGGAATGCATCTATAGACTAGAAGGCGAACTGGCGGCTAA
TAGAATCGAAATACGGATTTTTTAGTTCTTCGCACAAAGCCAG
UFO02843.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:26:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mei-S332-RB | 1594 | CG5303-RB | 87..1176 | 9..1080 | 4850 | 97.6 | Plus |
| mei-S332-RA | 1504 | CG5303-RA | 196..1285 | 9..1080 | 4850 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:26:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22122998..22123474 | 9..485 | 2370 | 99.8 | Plus |
| 2R | 25286936 | 2R | 22123534..22123994 | 484..942 | 2205 | 99.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:26:18 has no hits.
UFO02843.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:58:33 Download gff for
UFO02843.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mei-S332-RA | 190..1272 | 1..1068 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:32:14 Download gff for
UFO02843.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mei-S332-RA | 190..1272 | 1..1068 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:30 Download gff for
UFO02843.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mei-S332-RA | 190..1272 | 1..1068 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:09:30 Download gff for
UFO02843.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22122992..22123474 | 1..485 | 98 | -> | Plus |
| 2R | 22123536..22124077 | 486..1015 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:32:14 Download gff for
UFO02843.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18010497..18010979 | 1..485 | 98 | -> | Plus |
| arm_2R | 18011041..18011582 | 486..1015 | 97 | -> | Plus |
