UFO02844.5prime Sequence
1157 bp (1043 high quality bases) assembled on 2009-02-18
> UFO02844.5prime
CAGTCGACATGTCCGTTCAACAATCCAAGCCAAAGCAGAAGAAAGTCAAA
GTTAAAAAACAGGATGATGCCGGCTATGGATCCGGGGAATTTTCCTTGGA
CTGGGATGTAGACAGCTACAAGACGGAATACGAAAGTGATGAGCACTGGG
ATCTGCGACGCAGCTTCATGCTGGCCCACAAGGATCGTTTTGAGGAGGAC
CGGCTGGTGTGCCTGGCCCAAACGTTCGTCAACATGGAGTTCATGGGCTG
CAAGTATCCAAGCGCGACGATGCTTTTGGTGGCCGAGTTGTCCAAGGAAA
TCGCAGCGGATTTCCGTCAGAAACGGGAACAGCGCCTGAAGAGAACATTT
GTCTCGGCGTCGGATGCGGCGGAGCAGCGCGCCAAAGGGCGCCGGGCTCC
ACCCCTTCCCTCGACGAGCTCCCCAGAGGATAGCTCACACATAAAACGCC
AGTGTTTTGGCGGCGGAGATCCAGTCGATCTCTATCAAGATCTGCGTTTC
GGTCGGCTCATTGTGTACTTGGCTGGGGGACGAGCCTGCCTGCAAAACTC
CTGCAACATTGCGAATGTCAAGTACGAAGAGCGTGTCAGCCGAGATCAGC
CATTAAGCGATAATACAAAATACGCCGAATTATTAGTAAATGATGAGGTA
ATAGCGACAGGACAGGGGGAGAGCCTTAAGGCGGCCAAGAAAGCTGCCTA
TAAGCAGGCGCATTTGACGATCCAGTCCTATTGCTATAGTATTAAGCTGA
ATGCCACGCGCGACACCATCAAGGTGGAAAAAAACAAGGACGGCGTCAAC
ATCAAAGTCACCAATGAGTCCGCCGACAGTCCGTGCGATCCCAAATTGGA
CCCCAGCAACAAGGGATATCGCATGATGCGACTGATGGGCTGGACAGGCG
GTGGCTTAGGCGACTGAAGCAGGACGTGAAGAGCTCGTATGTATCTGCTA
AAGAACATCGTAATGGTCTGATAATAAATCCAAGGAAATTTCGCTGATTA
CCGACGCTTATAGAAAACTATGTGGAGAATCGACGAATTTACGTGACATG
CAGTTTGGAGCCCCGTTCGAAGAAGAAAGAACCACGCTTCACAATCGCTG
ACATGCTTGCTCGCTAGCTATGGAATGAAGGCCGGCTTTGATACAGAGAA
TCGACAT
UFO02844.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:09:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31301-RA | 1520 | CG31301-RA | 101..1195 | 9..1092 | 5020 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:09:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15346305..15346684 | 9..388 | 1900 | 100 | Plus |
| 3R | 32079331 | 3R | 15346792..15347152 | 386..746 | 1805 | 100 | Plus |
| 3R | 32079331 | 3R | 15347207..15347405 | 745..941 | 880 | 98.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:09:01 has no hits.
UFO02844.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:58:32 Download gff for
UFO02844.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31301-RA | 67..1227 | 1..1136 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:11:36 Download gff for
UFO02844.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31301-RA | 93..1253 | 1..1136 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:01:22 Download gff for
UFO02844.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31301-RA | 93..1253 | 1..1136 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:01:22 Download gff for
UFO02844.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15346297..15346683 | 1..387 | 98 | -> | Plus |
| 3R | 15346794..15347152 | 388..746 | 100 | -> | Plus |
| 3R | 15347209..15347405 | 747..941 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:11:36 Download gff for
UFO02844.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11172019..11172405 | 1..387 | 98 | -> | Plus |
| arm_3R | 11172516..11172874 | 388..746 | 100 | -> | Plus |
| arm_3R | 11172931..11173127 | 747..941 | 98 | -> | Plus |
