UFO02846.5prime Sequence
1123 bp (1028 high quality bases) assembled on 2009-02-18
> UFO02846.5prime
CAGTCGACATGTCCACGAGATCTTCATTCGCCGATGAAGAGCAGAACAAA
GTGCCCCGTATCATGACCTTCCGTCCCAGCTACGAGGAGTTTCAAAATTT
TTCCGCCTACATTGAGTACATTGAGTCTCGGGGAGCACACTTAGCCGGCT
TGGCCAAAATCCAACCACCTGCGGAATGGGTGCCCCGAAAGTCGGGCTAC
GACATAGACAACATCAACATGACCATTCCAGCGCCGATTTGCCAAGTAGT
CACTGGGGCGCACGGGGTGTACCAGCAAATCAACATCCAGCAGCGCCGGC
AGATGACCTTGCGCCAATTCATGGAGAAGGCCAACTCGGAGCTGCACCAG
ACACCGAGGCACTTCGACTACGACGATCTGGAGCGCAAGTACTGGAAGAA
CATCACCTACATATCGCCACTGTATGCAGCCGATGTCAAGGGATCGCTGA
GTGATGAAGACCTTGACGTTTGGAACATTGGACGCTTGGACACCATATTA
AACTTGGTCAACACTGACTACAACATAATCATCGATGGGGTAAACACGGC
TTACCTCTACTTTGGCATGTGGAAGAGCTCTTTTGCCTGGCATACCGAGG
ACATGGATCTGTATTCTATTAACTATCTGCATTTTGGAGCACCCAAAACC
TGGTACGCCATTCCGCCGGCGTATGGCAGACGTCTGGAGAAGCTGGCGAA
CGAAACCTTCTCTGAGAACTACCAGGAATGCAATGCCTATCTTCGCCATA
AGATGACCATGATCAGTCCGAAGTGCTGCGCCAGCACAACATACCTTACA
ACAAGATCACGCAGGAGCGGGCGAAATCATGATTACATTTCCCTTCGGCT
ACATGCCGGGTTCAATCATGGCTTCAACGGCGCCGAGTCGACCAACTTTG
CGTCGAAGCGTTGGATCGAGTACGGCAAGCGGGCTAGTATTTGCCGATGC
CGCAGCGACATGGTTAGATCTCGATGGAGACCTTCGTACGCCGTTTCCAG
CCAGAGCGATACGAATAATTGGCTGAAAGTCAGAAATGGGGCTGTCCTCC
CGAGGGGCCGGTTAAATATGGGCTGGCAGAACATCAATTTGATGAATCGA
GAACAGGAACTACGGTGCAGCCA
UFO02846.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:03:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Kdm4A-RB | 2004 | CG15835-RB | 73..1144 | 9..1075 | 5070 | 98.7 | Plus |
| Kdm4A-RA | 2022 | CG15835-RA | 73..1144 | 9..1075 | 5070 | 98.7 | Plus |
| Kdm4B-RE | 5718 | CG33182-RE | 1117..1511 | 543..934 | 460 | 75.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:03:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7923719..7924533 | 1066..256 | 3675 | 98.4 | Minus |
| 2R | 25286936 | 2R | 7924761..7924916 | 164..9 | 780 | 100 | Minus |
| 2R | 25286936 | 2R | 7924597..7924689 | 257..165 | 465 | 100 | Minus |
| 2R | 25286936 | 2R | 13186792..13186924 | 934..804 | 355 | 88 | Minus |
| 2R | 25286936 | 2R | 13187132..13187244 | 655..543 | 205 | 78.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:03:46 has no hits.
UFO02846.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:58:39 Download gff for
UFO02846.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15835-RA | 60..1118 | 1..1055 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:31:56 Download gff for
UFO02846.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kdm4A-RA | 65..1123 | 1..1055 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:46:26 Download gff for
UFO02846.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kdm4A-RA | 65..1123 | 1..1055 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:46:26 Download gff for
UFO02846.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7923730..7924532 | 257..1055 | 98 | <- | Minus |
| 2R | 7924598..7924689 | 165..256 | 100 | <- | Minus |
| 2R | 7924761..7924923 | 1..164 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:31:56 Download gff for
UFO02846.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3811235..3812037 | 257..1055 | 98 | <- | Minus |
| arm_2R | 3812103..3812194 | 165..256 | 100 | <- | Minus |
| arm_2R | 3812266..3812428 | 1..164 | 97 | | Minus |
