UFO02848.5prime Sequence
1070 bp (1021 high quality bases) assembled on 2009-02-18
> UFO02848.5prime
CAGTCGACATGCCCATTTACGAGAGCGTGATGCAGGAGAAGCCGCCCATT
GTCCTCGACATTGGCACCGCCTACACCAAGCTGGGATTCGCAGCGGAGGC
GTATCCGCGCAAGATCATGCCCACGGAGGTGGTGATGACCACGACGGGGA
TCCGGAAGCGTCTGTTCGACTACGACACTCCGGAGGAGCTGTACGACCAG
CTAGTGGATTTTCTGCAGACGATCTTCTTCAAGCATCTACTGGTCAGCCC
CAAGGAGCGCAAGTTCGTGCTGGTGGAGAACGTGTTCGGATCCACTGTGC
TGCGTGAAACCTTGGCCCGCGTGCTCTTTGTCCACTTCGACGTCTCCTCC
GTGCTGTTCGTGCCCGTGCATCTCATTGCGCTGTCTACGCTGGCAGTGCC
CACTGCCCTTGTGGTGGACGTTGGCTACAGCGAGACCAGCGTTATGCCCG
TCTTCAGCGGGGTGCAAATCATGGCCGCCTTCAAGGATCAGAGCTACGGA
GGCAGCGCCATCCACGCGGAGATCAAGCGGCAGCTGGTTGAGAGTGGCGT
TAAGGAGAGCCTGCTAACAGAAAGCGTGCTGGAGGACATCAAGGTGCGAA
CCTGCTTTGTGACCACCATGGAAAGAGCCAAGGCCCGCGCCAACGGCGAC
GAGAATCAGCCGACTCCCGCGCCAGACGTGGACTACATTGTCAGCGACAA
CGATGCGGTCATCCAGGTGCCCGGCCTCCTGCGGGAGTCTGCCTACGAGA
TCATGTTCGAGGCCAGCAACGAGCGGGACAGCCTGCCGCATCTCATCCTG
CGCTCCATTCTCGACTGCACACTAGACGTGCGACGTGCCCTGCTCGAGAG
TGTGTTCCTCGTGGGCGGCGGCTCAATGGTCCAGGGTCTGCTGGCCCGCC
TCCGCCAGGAGCTGCAGCATCTGCTCACCGAGGATCCGTTCTACGCGACG
CTTCATGGCGAGCTGCAGTTCAAGTTTTTCAATGCTGTCGCAGCAACTTT
ACTGCCTGCTGGGCGGCGCCTGGTGCGGGCGACGATCTCATTCCAAAACA
GATCGCTGGTCAAGGGAAAC
UFO02848.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:46:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arp10-RB | 1536 | CG12235-RB | 261..1326 | 9..1065 | 4980 | 98.5 | Plus |
| Arp10-RA | 1374 | CG12235-RA | 99..1164 | 9..1065 | 4980 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:46:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19644779..19645582 | 1028..233 | 3665 | 98.5 | Minus |
| X | 23542271 | X | 19645632..19645785 | 233..80 | 770 | 100 | Minus |
| X | 23542271 | X | 19645845..19645916 | 80..9 | 360 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:46:58 has no hits.
UFO02848.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:05:44 Download gff for
UFO02848.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arp11-RA | 123..1200 | 1..1070 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:39:34 Download gff for
UFO02848.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arp10-RA | 91..1168 | 1..1070 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:28:56 Download gff for
UFO02848.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arp10-RA | 91..1168 | 1..1070 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:28:56 Download gff for
UFO02848.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19644737..19645582 | 233..1070 | 97 | <- | Minus |
| X | 19645633..19645785 | 80..232 | 100 | <- | Minus |
| X | 19645846..19645924 | 1..79 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:39:34 Download gff for
UFO02848.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19538770..19539615 | 233..1070 | 97 | <- | Minus |
| arm_X | 19539666..19539818 | 80..232 | 100 | <- | Minus |
| arm_X | 19539879..19539957 | 1..79 | 96 | | Minus |
