UFO02851.5prime Sequence
1121 bp (1046 high quality bases) assembled on 2009-02-18
> UFO02851.5prime
CAGTCGACATGATATTATTCAAAGGAATTCGGCGGGTGCAATCCCAGCTA
AGAACGCCGGTTGATTTGGTGCTCATTCGGTACTCCACTGCAGCAACGAT
AGCTTCCCAAGATGACAAAGGTGTCACTACAGCGTCGCCAGTATCCCAGG
CGGGAAAGGTCCAGCATTTACCCGATAGTCAAATTACCTGGATGCCTAGT
CCGTACACCATGCCCGGAAAAACTCTTAGCCAGTACAAGAAGCTATCCAA
GTTCCGGCTGACATCGCTGGTGGTCATTACAACGATGGGCGGCTATGCCA
TGGCGCCAGCTGCTTTCGATCCCACAACGTTTGCGATGTGCACCCTGGGC
ACAGGACTCGTTTCGGCTGCGGCGAATGCCATTAATCAGTATCACGAAGT
TCCTTTCGATTCGCAGATGTCGAGGACAAAGAACCGGGTGCTCGTCACGG
GGCAAATGACACCACTGCATGCAGTTACCTTCGCCGCGGTGTCGGCAACT
GCCGGCTTAAGTATGCTGTATTTCGGAGTAAATGGATTGACGGCGGCGCT
GGGAGCGGGTAACCTGTTCCTCTACACCACGATATACACACCGATGAAGC
GTATCAGCATAGTCAATACCTGGGTGGGATCGATAGTGGGCGCCATTCCT
CCGCTGATGGGATGGGCTGGTTGTGCAGCCACCCTGGACGCCGGCGCCAT
GATCCTAGCCGGAGTGCTGTACGCGTGGCAGTTCCCGCACTTCAACGCTC
TGTCGTGGAACCTCCGGCCGGATTATTCACGTGCCGGCTACCGAATGATG
GCCGTTACCAATCCCGGGTCTTTGTCGCCGCACTGCGCTGCGATATTCGG
TGGCTATTGTCGGACTTTCAGCCATGGCACCCGTACTGGACGTCACGAAC
TACTGGTTTGCCTTGGAAACCACTACCTCTGAACGCGTACTTCGCCTACC
TTGCGTACAAGTTTCATGAAAAGTCAGATAGTGGGAGCTCCGCGGAAGCT
GTTCCGATTTTCACTGATACACCTGCCCGCCCCTGATGCTTGCTATTCTG
ACAATAAAAGGAATGTTTCGCAATCGCCCGGGGAGAAACAAAAGAATCCG
GTCATGCGATAAGATCGCTAC
UFO02851.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:46:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5037-RA | 1473 | CG5037-RA | 140..1194 | 9..1065 | 5100 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:46:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10331988..10332674 | 265..953 | 3345 | 99.7 | Plus |
| 2L | 23513712 | 2L | 10331742..10331930 | 76..264 | 930 | 99.5 | Plus |
| 2L | 23513712 | 2L | 10331610..10331681 | 9..80 | 360 | 100 | Plus |
| 2L | 23513712 | 2L | 10332738..10332816 | 953..1032 | 350 | 98.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:46:44 has no hits.
UFO02851.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:05:42 Download gff for
UFO02851.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5037-RA | 148..1202 | 9..1065 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:39:24 Download gff for
UFO02851.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5037-RA | 140..1194 | 9..1065 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:28:47 Download gff for
UFO02851.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5037-RA | 140..1194 | 9..1065 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:28:47 Download gff for
UFO02851.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10332739..10332850 | 954..1065 | 94 | | Plus |
| 2L | 10331610..10331681 | 9..80 | 100 | -> | Plus |
| 2L | 10331747..10331930 | 81..264 | 100 | -> | Plus |
| 2L | 10331988..10332674 | 265..953 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:39:24 Download gff for
UFO02851.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10331610..10331681 | 9..80 | 100 | -> | Plus |
| arm_2L | 10331747..10331930 | 81..264 | 100 | -> | Plus |
| arm_2L | 10331988..10332674 | 265..953 | 99 | -> | Plus |
| arm_2L | 10332739..10332850 | 954..1065 | 94 | | Plus |
