UFO02852.5prime Sequence
1124 bp (1030 high quality bases) assembled on 2009-02-18
> UFO02852.5prime
CAGTCGACATGGCCGGAGGAAGTCGCCCTCTCCAATTAGTTCTCCTGGTC
CTAGTTGCGCTCGCCCAATGGCAACCCATCGCCGCTGGATTGGTCTCCAA
CGAGGAGCTGCGCGGAACTATCCAGTCGCTGATCTACTCCTACAATCAGC
TGGACAATAAGCTGGAGCGGCACGAGCATCGCGAGCGTGCGTTGGGCGAG
CTGCTCAAGAAGGCGCTGCAGTCGCTCCAGAAGGGCCAGAAGAGCCTGGA
GCCCATCAATGGGATCTTCGGGCGCCTGGACGAGCGGGTCAGCCAGATAG
AGACCATGCTGATCACGCAAGAGGAGAAGTACAACTCGCAGTCGGACCGC
TTCAACCAGGCAACGGAGCACATGTTCAAGTGGATGCGGGAGAACGACGA
GTGCTTCAAGAGGCCGCCGGTCAGCGCCAACATGATCGCTCCCCCAGCCG
CGGCCGCCCCACCCGCCATTCCCAAGGAGTTCCTGGAGGATCAGAAGCGC
CTCAACGCCAAGCTGCTCGAGGAGATCCAGAAGTTGTCGGCCAGCGTGGC
CGCCCTCAAGGAGAGCAGCCAGAAGGCGTCCGATCAGACCCAGAAGCGCC
TCGAGGGTCTGCCCAAGGCACCGGAGCTGCTGTCCCAGATCGAAGCCAAG
CTGCAAGAGCACGCGGCCAGCGTGACCACCGCCGCTCCACCGAAGAACGC
TGAGTTCGAGGCCCAACTCCTGGAGCGTCTCACCTCGCTGGGCGGCCAGG
TGAGCTCTCTAAGCGAGACTGTGCAGCGACCAGCTGCTCCGGTTGGCCTG
AGCGAGACGGATCGCGCCTACATCCAGGAACTGAACAACGATACCCTGAA
TGCGCTGGCGCAGCTGAGAGCGAGTCCTCGGTGGAACAGAGTCAGCTGCG
ACGGAGCCACGGAGCGACTGCAGCAGCGGAGCCAACATCCAGGCGGACGT
TCGCAGCTGTCCGCGGACGTGGGCATTCTCACAGCACTTCGCCTCGACTA
CGAGAGCATGCCAAGCTGACGAGGGACTCGAGCGCCTCGGTAGTCAACAA
CAACATGATGACCACTCGAGTCTGGGTTGGACCGCCACGCAGGTGACCTC
CGCAACTGACTGGTGCACGGTGGC
UFO02852.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:13:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5080-RC | 2350 | CG5080-RC | 532..1600 | 9..1064 | 4960 | 98.5 | Plus |
| CG5080-RA | 2617 | CG5080-RA | 799..1867 | 9..1064 | 4960 | 98.5 | Plus |
| CG5080-RB | 2007 | CG5080-RB | 189..1257 | 9..1064 | 4960 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:13:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1161296..1161870 | 890..317 | 2825 | 99.8 | Minus |
| 2L | 23513712 | 2L | 1161927..1162146 | 317..98 | 1100 | 100 | Minus |
| 2L | 23513712 | 2L | 1163000..1163088 | 97..9 | 445 | 100 | Minus |
| 2L | 23513712 | 2L | 1161040..1161222 | 1064..893 | 330 | 90.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:13:28 has no hits.
UFO02852.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:58:28 Download gff for
UFO02852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5080-RA | 246..1323 | 1..1068 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:20:58 Download gff for
UFO02852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5080-RB | 185..1262 | 1..1068 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:53:57 Download gff for
UFO02852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5080-RB | 185..1262 | 1..1068 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:53:57 Download gff for
UFO02852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1161035..1161219 | 896..1068 | 91 | <- | Minus |
| 2L | 1161290..1161869 | 318..895 | 99 | <- | Minus |
| 2L | 1161927..1162146 | 98..317 | 100 | <- | Minus |
| 2L | 1163000..1163092 | 1..97 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:20:58 Download gff for
UFO02852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1161035..1161219 | 896..1068 | 91 | <- | Minus |
| arm_2L | 1161290..1161869 | 318..895 | 99 | <- | Minus |
| arm_2L | 1161927..1162146 | 98..317 | 100 | <- | Minus |
| arm_2L | 1163000..1163092 | 1..97 | 95 | | Minus |
