UFO02853.5prime Sequence
1105 bp (983 high quality bases) assembled on 2009-02-18
> UFO02853.5prime
CAGTCGACATGACCACCCATTCCGTTGTTGACCTGCGCTCGGACACCGTC
AGCCAGCCGACGGACAAGATGCGGGCCCGGATGGCCACCGCCGTGGTCGG
GGATGACGTTTATGGCGAGGATCCCACCGTCAACGAACTGGAGGCGCGAA
CAGCGGCCATTTTCGGCAAGGAGGCGGGCCTCTTTGTGCCCAGCGGCACC
ATGGGAAATCTACTGGCAATTATGGTTCACTGCCATCGTCGTGGCACGGA
GGCCCTGGTCGGCGATTTATCGCACATCTTTCTGTACGAACAAGGTGGCG
CCTCGCATTTGGCCGGAGTCCAATTAGCCACTCTGAAGAACGAGCAGGAT
GGCACCTTTAGTCTGCAGGATCTGCGCCGCAGGATACGCCACGAAGACTG
CCACGAGCCCATCACCTCGCTGGTGGTGGTGGAGCAGACCCACAATATCT
GCGGTGGCAAAGTGGTGCCTCTGGCCTTCTTGGATGAGCTAGCTGCTCTG
GTCCGACAGCCGGGCGTGGGCACTGGGAACGCCCGTATCGCTCTACACAT
GGACGGAGCGAGGGTCTTTAATGCGGCCACCGCCTTGGGCGTGAGAGTGG
AGCGCATCTGCCGCGATTTCGATTCGGTATCTATCTGCCTCAGCAAGGGC
TTATCGGCTCCCGTGGGATCCGTGTTAGTCGGCTCCAAGGCCTTCATTTC
GGACGCCCATCGACTGCGCAAAGCTTTGGGAGGCGGATGCGGCAGGTGGG
AGTGTTAGCAGCAGCTGGACTGGTAGCTTTGGATGAAGTGGTACCACTTC
TGAGCAAAGATCACGAGCGGACCAATAAATTGCCAACGCTATATATGAAC
TGAAAGTCCCACATTACCGTACACGTGTCGTCTGTCAGAGCATATCCTTC
TGGTAGAGATAACCCAACCCATCTGACGGCCAGTGAGTTCTTCCACCCGG
TTGAGCATCGTTGATGCTGTGAAGTGGAGGCGGACTGACGACAAAACTGG
AGCCGGATTCGCGGTGAAGGTATCTGCCCGGGATGGCATTTGCGAAACTG
TGGCTCCTACCATCAGGTGGACGAATGAGCATGGCACTGGCCATCAGGAA
GCTGA
UFO02853.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:38:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10184-RA | 1330 | CG10184-RA | 87..1194 | 9..1105 | 4850 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:38:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23603354..23603764 | 703..293 | 2040 | 99.8 | Minus |
3R | 32079331 | 3R | 23604814..23605024 | 219..9 | 1055 | 100 | Minus |
3R | 32079331 | 3R | 23602987..23603112 | 829..705 | 580 | 99.2 | Minus |
3R | 32079331 | 3R | 23602643..23602919 | 1105..838 | 450 | 88.2 | Minus |
3R | 32079331 | 3R | 23603825..23603902 | 297..220 | 390 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:38:58 has no hits.
UFO02853.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:58:28 Download gff for
UFO02853.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10184-RA | 79..1185 | 9..1104 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:50:15 Download gff for
UFO02853.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10184-RA | 87..1193 | 9..1104 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:08:32 Download gff for
UFO02853.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10184-RA | 87..1193 | 9..1104 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:08:32 Download gff for
UFO02853.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23602784..23602918 | 839..969 | 94 | <- | Minus |
3R | 23602977..23603113 | 704..838 | 97 | <- | Minus |
3R | 23603354..23603762 | 295..703 | 99 | <- | Minus |
3R | 23603828..23603902 | 220..294 | 100 | <- | Minus |
3R | 23604814..23605030 | 1..219 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:50:15 Download gff for
UFO02853.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19428506..19428640 | 839..969 | 94 | <- | Minus |
arm_3R | 19428699..19428835 | 704..838 | 97 | <- | Minus |
arm_3R | 19429076..19429484 | 295..703 | 99 | <- | Minus |
arm_3R | 19429550..19429624 | 220..294 | 100 | <- | Minus |
arm_3R | 19430536..19430752 | 1..219 | 98 | | Minus |