Clone UFO02853 Report

Search the DGRC for UFO02853

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:28
Well:53
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCG10184-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO02853.5prime Sequence

1105 bp (983 high quality bases) assembled on 2009-02-18

> UFO02853.5prime
CAGTCGACATGACCACCCATTCCGTTGTTGACCTGCGCTCGGACACCGTC
AGCCAGCCGACGGACAAGATGCGGGCCCGGATGGCCACCGCCGTGGTCGG
GGATGACGTTTATGGCGAGGATCCCACCGTCAACGAACTGGAGGCGCGAA
CAGCGGCCATTTTCGGCAAGGAGGCGGGCCTCTTTGTGCCCAGCGGCACC
ATGGGAAATCTACTGGCAATTATGGTTCACTGCCATCGTCGTGGCACGGA
GGCCCTGGTCGGCGATTTATCGCACATCTTTCTGTACGAACAAGGTGGCG
CCTCGCATTTGGCCGGAGTCCAATTAGCCACTCTGAAGAACGAGCAGGAT
GGCACCTTTAGTCTGCAGGATCTGCGCCGCAGGATACGCCACGAAGACTG
CCACGAGCCCATCACCTCGCTGGTGGTGGTGGAGCAGACCCACAATATCT
GCGGTGGCAAAGTGGTGCCTCTGGCCTTCTTGGATGAGCTAGCTGCTCTG
GTCCGACAGCCGGGCGTGGGCACTGGGAACGCCCGTATCGCTCTACACAT
GGACGGAGCGAGGGTCTTTAATGCGGCCACCGCCTTGGGCGTGAGAGTGG
AGCGCATCTGCCGCGATTTCGATTCGGTATCTATCTGCCTCAGCAAGGGC
TTATCGGCTCCCGTGGGATCCGTGTTAGTCGGCTCCAAGGCCTTCATTTC
GGACGCCCATCGACTGCGCAAAGCTTTGGGAGGCGGATGCGGCAGGTGGG
AGTGTTAGCAGCAGCTGGACTGGTAGCTTTGGATGAAGTGGTACCACTTC
TGAGCAAAGATCACGAGCGGACCAATAAATTGCCAACGCTATATATGAAC
TGAAAGTCCCACATTACCGTACACGTGTCGTCTGTCAGAGCATATCCTTC
TGGTAGAGATAACCCAACCCATCTGACGGCCAGTGAGTTCTTCCACCCGG
TTGAGCATCGTTGATGCTGTGAAGTGGAGGCGGACTGACGACAAAACTGG
AGCCGGATTCGCGGTGAAGGTATCTGCCCGGGATGGCATTTGCGAAACTG
TGGCTCCTACCATCAGGTGGACGAATGAGCATGGCACTGGCCATCAGGAA
GCTGA

UFO02853.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:38:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG10184-RA 1330 CG10184-RA 87..1194 9..1105 4850 96.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:38:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23603354..23603764 703..293 2040 99.8 Minus
3R 32079331 3R 23604814..23605024 219..9 1055 100 Minus
3R 32079331 3R 23602987..23603112 829..705 580 99.2 Minus
3R 32079331 3R 23602643..23602919 1105..838 450 88.2 Minus
3R 32079331 3R 23603825..23603902 297..220 390 100 Minus
Blast to na_te.dros performed on 2014-11-28 20:38:58 has no hits.

UFO02853.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:58:28 Download gff for UFO02853.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10184-RA 79..1185 9..1104 96   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:50:15 Download gff for UFO02853.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10184-RA 87..1193 9..1104 96   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:08:32 Download gff for UFO02853.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10184-RA 87..1193 9..1104 96   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:08:32 Download gff for UFO02853.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23602784..23602918 839..969 94 <- Minus
3R 23602977..23603113 704..838 97 <- Minus
3R 23603354..23603762 295..703 99 <- Minus
3R 23603828..23603902 220..294 100 <- Minus
3R 23604814..23605030 1..219 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:50:15 Download gff for UFO02853.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19428506..19428640 839..969 94 <- Minus
arm_3R 19428699..19428835 704..838 97 <- Minus
arm_3R 19429076..19429484 295..703 99 <- Minus
arm_3R 19429550..19429624 220..294 100 <- Minus
arm_3R 19430536..19430752 1..219 98   Minus