UFO02854.5prime Sequence
1160 bp (1049 high quality bases) assembled on 2009-02-18
> UFO02854.5prime
CAGTCGACATGGCGGTCTTTGGCATGGTCTCGGCTGTGTCCGGCTTTATC
AAGATACGCTATCTGCTGGACAAGGCGGTCATCGACAACATGGTTTTCCG
CTGCCACTACAGGATCACGACGGCCATTCTGTTCACTTGTTGCATCATCG
TCACCGCAAACAATCTGATCGGCGATCCCATAAGTTGCATCAACGACGGC
GCCATTCCGATGCACGTAATCAACACCTTCTGCTGGATCACCTACACGTA
CACGATACCTGGCCAGCAGCATCGGCAAATCGGAACGGACGTGGCTGGTC
CGGGATTGGGCAATGAGTACGGCCAGGAGAAGCGCTATCACAGCTACTAT
CAATGGGTGCCATTCGTGCTATTCTTCCAGGGGCTCATGTTCTACGTGCC
CCACTGGGTTTGGAAGAACATGGAAGACGGCAAGATCCGCATGATCACCG
ATGGACTGCGCGGCATGGTCAGTGTGCCGGATGACTATCGGCGTGATCGC
CAGGACCGGATCCTCAAGTATTTCGTGAACAGTTTGAACACCCACAACGG
CTACTCGTTCGCATACTTTTTCTGCGAACTGCTTAACTTTATCAACGTGA
TTGTGAATATCTTTATGGTGGATAAGTTTCTGGGCGGTGCTTTCATGTCC
TACGGTACGGATGTGCTCAAGTTCTCCAACATGGATCAGGACAAGCGCTT
CGATCCGATGATCGAGATCTTTCCCCGGCTCACCAAGTGCACGTTCCACA
AGTTCGGTCCCAGTGGATCGGTCCAGAAACACGACACTCTCTGTGTGCTG
GCACTGAATATCCTCAACGAGAAGATCTACATCTTCCTGTGGTTCTGGTT
TATCATCTTGGCCACCATCTCCGGCGTGCTGTGCTCTATTCACTGGTGGT
TATCATGATGCCCACCACTCGGGAGACCATCATCAGCGTTCTTATCGCTC
GGCACAACGGAAGGAAATCGCCGGACTGGTTAGGCGTTGGAGATGGTGAC
TTCCTGATCTTGCCACTTCCTGGAGCCAGAACCTCAGCCCCAGATCGTAC
AGGTGAAATTCCTGCAGCAGCTTCTGCGGTCTGCTAGGGAGCCATCCCGG
AAAACCATCCGCACAATCGAACCCTTGGAATGGACCCCCATCAGCCACTC
GATTATCCGC
UFO02854.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:19:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Inx3-RC | 1652 | CG1448-RC | 139..1287 | 7..1160 | 5255 | 97.8 | Plus |
| Inx3-RB | 2136 | CG1448-RB | 92..1240 | 7..1160 | 5255 | 97.8 | Plus |
| Inx3-RA | 1605 | CG1448-RA | 92..1240 | 7..1160 | 5255 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:19:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 28854944..28855416 | 843..371 | 2335 | 99.6 | Minus |
| 3R | 32079331 | 3R | 28855732..28855942 | 381..171 | 1055 | 100 | Minus |
| 3R | 32079331 | 3R | 28857142..28857307 | 172..7 | 830 | 100 | Minus |
| 3R | 32079331 | 3R | 28854735..28854884 | 988..841 | 650 | 98.7 | Minus |
| X | 23542271 | X | 6999832..6999959 | 730..857 | 235 | 78.9 | Plus |
| X | 23542271 | X | 6974773..6974900 | 850..723 | 220 | 78.1 | Minus |
| X | 23542271 | X | 6992243..6992360 | 849..732 | 185 | 77.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:19:04 has no hits.
UFO02854.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:58:27 Download gff for
UFO02854.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| inx3-RA | 66..1205 | 1..1147 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:55:59 Download gff for
UFO02854.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Inx3-RA | 87..1226 | 1..1147 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:57:06 Download gff for
UFO02854.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Inx3-RA | 87..1226 | 1..1147 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:57:06 Download gff for
UFO02854.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 28854730..28854883 | 842..992 | 98 | <- | Minus |
| 3R | 28854946..28855406 | 381..841 | 100 | <- | Minus |
| 3R | 28855733..28855941 | 172..380 | 100 | <- | Minus |
| 3R | 28857143..28857312 | 1..171 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:55:59 Download gff for
UFO02854.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24680452..24680605 | 842..992 | 98 | <- | Minus |
| arm_3R | 24680668..24681128 | 381..841 | 100 | <- | Minus |
| arm_3R | 24681455..24681663 | 172..380 | 100 | <- | Minus |
| arm_3R | 24682865..24683034 | 1..171 | 98 | | Minus |
