UFO02856.5prime Sequence
1115 bp (1010 high quality bases) assembled on 2009-02-18
> UFO02856.5prime
CAGTCGACATGAAGCTGCTGGGCAAATACGTGGACAAGGGCATGCAGGGA
AATGTGACCCTGGTGCCGGAGGAGTCCGAGGATATGTGGCACGCCTACAA
TTTGATTGCGAAAGGCGACAGCGTGCGCAGCACCACTATTCGCAAGGTGC
AGAATGAAACGGCTACTGGCTCCTCCACCAGCAGCCGGGTGCGCACCACA
CTAACCATCGCAGTGGAGAGCATAGATTTTGATACGCAGGCTTGTGTGCT
CCGCCTTAAAGGCAGAAACATCGAGGAGAACCAGTATGTCAAGATGGGCG
CCTATCACACCCTCGACCTGGAGCTGAATCGCAAGTTCGAGCTGCGTAAG
CCGGAATGGGACACAATTGCCTTAGAGCGCATCGAAATGGCCTGCGATCC
CACACAGTCTGCGGATGTAGCCGCCGTTGTGATGCAGGAGGGATTAGCAC
ACGTCTGCCTGATCACCGCCAGTATGACCCTGGTGCGGAGCAAGATTGAG
GTCTCCATACCGCGCAAGCGCAAGGGCAGTGTCCAGCAACACGAGAAGGG
ACTGGCCAAGTTCTACGAGCAGGTTATGCAGAGCATCCTGCGGCACGTCA
ACTTCGATGTGGTCAAGTGTGTGTTGATTGCGTCGCCGGGATTCGTGCGC
GATCAGTTCTATGACTACATGTTCCAGCAGGCGGTCAAAATGGATTACAA
GCTGCTGCTGGACAACAAGAGCAAGTTTATGCTGGTGCACGCATCCTCGG
GATTTAAGCACTCCTTAAGAGAAATTCTACAGGATCCCGCCGTGCTGGCC
AAGATGTCTGACACCAAGGCAGCTGGCGAGGTCAAGGCCCTGGAACAATT
CTACATGATGCTGCAATGTGAGCCCGCCAGGCCTTCTATGGAAAGAAACA
TGTCCTCCAGCCGCCGAGTCGCAGCCATCGAAACGCTGCTGATCTCGGAC
ACTCTTTAGATGCCAAGACGTTAGTCTGAGAAGGATATGTCATCTGGTCG
ATCCATTCCCGATTGCTTGGGGGAGAAAGTCAAATCTTTTCGAGCATGCA
CATCTTCAGAGAAACACTGCTCACTAACTGGATGCATCCTCCTGCCTCGA
TGCGACTGAGGAACG
UFO02856.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:56:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pelo-RA | 2045 | CG3959-RA | 244..1326 | 9..1082 | 4975 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:56:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9701152..9701874 | 49..771 | 3615 | 100 | Plus |
| 2L | 23513712 | 2L | 9701928..9702112 | 770..951 | 775 | 98.4 | Plus |
| 2L | 23513712 | 2L | 9701053..9701093 | 9..49 | 205 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:56:18 has no hits.
UFO02856.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:58:24 Download gff for
UFO02856.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pelo-RA | 249..1330 | 1..1073 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:12:08 Download gff for
UFO02856.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pelo-RA | 235..1316 | 1..1073 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:30:29 Download gff for
UFO02856.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pelo-RA | 235..1316 | 1..1073 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:30:29 Download gff for
UFO02856.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9701044..9701093 | 1..49 | 92 | -> | Plus |
| 2L | 9701153..9701874 | 50..771 | 100 | -> | Plus |
| 2L | 9701930..9702122 | 772..959 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:12:08 Download gff for
UFO02856.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9701044..9701093 | 1..49 | 92 | -> | Plus |
| arm_2L | 9701153..9701874 | 50..771 | 100 | -> | Plus |
| arm_2L | 9701930..9702122 | 772..959 | 97 | -> | Plus |
