UFO02860.5prime Sequence
1068 bp (971 high quality bases) assembled on 2009-02-18
> UFO02860.5prime
CAGTCGACATGTCGGAAGAAGCGGCTAGCACCTCGTCCTTTGGCTTCAAG
AAGCGGAACCTCAAGAAGGGAGCTGGAATTCGTCGCAAAAAGGAAACCAG
CAGTGATGAATCTGCAAAAAGCAGCGATGAAGAGACCAAAGGCAAAGCCA
GTGCTCTGGTGCGAGCCGAGAACCGCCGAAAGCGCACGAATCCCAACTTC
CAGAGCACCAAGACAATGAGCAAAGCAAAGAGACAGGCGGGAGGAGTTGG
TGATGATGGCTCATCCTCAGCCTCCGACGATGATAAACTGGGCATTGCGT
ACAAATCCAAACGCGAGGCGCTGCCCAGTGGACCCCAAGATCAGGGAGCT
ACATCGATTAACGAAATGGACACAGAATTGGATCGCGATGCGCAGGCAAT
TCATGCGCGAGCTCTGAAAATCAACGAAGAGCTGGAGGGCAAGGCGGACG
ATAAGATCTATCGCGGAATTAACAACTATGCGCAGTACTACAAGAAGCAG
GATACAGCGGCAGGGAATGCCAGCTCCGGAATGGTACGAAGTGGCCCAAT
TAGGGCTCCTGCCCATCTTAGGGCCACTGTCAGGTGGGATTATCAGCCGG
ATATATGCAAGGATTACAAGGAAACAGGATATTGCGGCTTTGGCGACAGC
TGTAAGTTTCTGCACGATCGCAGTGATTACAAAGCGGGCTGGCAATTGGA
AATGGATCACGAAAATCAGCGAACGGGTGATGTAGACTCCGATGGCGATG
ATACCAAGTATGAGATTCACTCAGATGAAGAAACACTGCCTTTCAAGTGC
CACATCTGCCGACAGAGTTTTGTCAATCCCGTGGTAACAAAGTGCAAGCA
CTATTTTCTGTGAAAGTGCGCCTTGCCCAGTAACAAAAGTCACAGCGCTG
CATCATCTGTTCCCAGCAAACAAATGGTATTTTCAATCCCGACTAGAGCT
GATACTCGCCTCAGACAACCCATGGAAACTCGATGTGATGAGGAGAGATT
TGGTAAAGTAGATAGCGAGCAGGGAGGAAGCCTCAGGAAATTTCTTCGAG
ATACGATCAGCTTTCTAG
UFO02860.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:13:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mdlc-RA | 1419 | CG4973-RA | 107..1165 | 9..1048 | 4650 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:13:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20058017..20058746 | 114..843 | 3635 | 99.9 | Plus |
| 3R | 32079331 | 3R | 20057854..20057959 | 9..114 | 530 | 100 | Plus |
| 3R | 32079331 | 3R | 20058812..20058912 | 842..941 | 335 | 91.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:13:02 has no hits.
UFO02860.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:05:43 Download gff for
UFO02860.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4973-RA | 98..1080 | 1..978 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:07:08 Download gff for
UFO02860.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4973-RA | 100..1082 | 1..978 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:52 Download gff for
UFO02860.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mdlc-RA | 100..1082 | 1..978 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:41:52 Download gff for
UFO02860.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20058812..20058912 | 842..941 | 95 | == | Plus |
| 3R | 20057847..20057959 | 1..114 | 96 | -> | Plus |
| 3R | 20058018..20058744 | 115..841 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:07:08 Download gff for
UFO02860.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15884534..15884634 | 842..941 | 95 | == | Plus |
| arm_3R | 15883569..15883681 | 1..114 | 96 | -> | Plus |
| arm_3R | 15883740..15884466 | 115..841 | 99 | -> | Plus |
