UFO02861.5prime Sequence
1128 bp (1032 high quality bases) assembled on 2009-02-18
> UFO02861.5prime
CAGTCGACATGGCGAGCGGGACAAGCGGCACAAGCAGCAGTGAAACGGCC
CAGTCGACGGACATGGCACCATCATCGGCCGAGAAGTGGGGCTTCCCTTT
GATTGAGCTCTACCGCCTGGCATTCACGTTCTACAAGCGGAACTCCGGCA
AGGCCATCCACTTGTCGTACGAGGACAACCTCAAGCTGATCGCCTTCAAG
CAGCAGGCGGCGCTGGGCCCCTTCAACACGAGTCGCGCCCCGGCGCTGGG
CGTCCTGGACGTGATCGGACGCGACCGGCAGCAGCACTGGCAGCTGCTCG
GTGAGATAACGCGCGAGCAGGCGATGGAGGGGTTCGTCGACCTGCTGGAC
ACAATGTGCAGCGCCTTTCGGCCGTACATTGAGGCCGTGCGGCAGGACCG
CGACGAGACGCTGCGCAAGGAGCTGCGCCTCATGGAGGAGAAGAAGGAGG
CACGCGAGCGGCAGGAGAACGCCCAGCAGGAGCTGCTCGAGGAGGGTTAC
AAGGAGGAGCTGCAGCGCCGCCAGCTGCAGGACGCACTCAACAAGCAGAC
TTACCAGCAGTTTAAGCTGTACGCTGAGAAGCAGTTCCCCGGAAACCCCG
AACAGCAGGCCGTGCTTATCCACCAGCTGCAGCGGGAGCACTATCACCAG
TACATGCAACAGCTTCATCTGCAGAACCAGAACCAGAATCAGAATCAGAA
CACGGAGGACAAGGGACACCAGGAAGCAGAACACGTCCCTGGCAATAACA
ACAACAGCTCAACCGACTTGCCCAACGCCATGGAGGGACTGAAGCTCGGT
GAGGTCGAGACACAGCAGCACCAGCAGCTGGCCGAGCAGCAAGACGGGCA
TGTAGAGCAGACGTTGGAGGGCGTTGGGCAGGAACAGCACGGCGAGGAGA
GTACGACGACTACGTTATGATCTGCCCGGCCAGATCTGGACTCGTCCCGA
CATCGAGCAGTTTAGACTGAGTGTCCGCCGGCGATGGGGACGGCGTCATC
ACATTGGACACCGCGACCGTGACGTCGTGTGCCCACCACATGACCGCAGT
GCATCTTCTGGGAGTCGCCACGGACAGCTACGACTCGCTCGCATCTACTT
CCGATGCCAGTCCGGACACAGGTACGTG
UFO02861.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:05:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14232-RB | 1874 | CG14232-RB | 165..1275 | 8..1101 | 5100 | 98.3 | Plus |
| CG14232-RA | 1905 | CG14232-RA | 135..1245 | 8..1101 | 5100 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:05:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19703403..19703830 | 566..139 | 2140 | 100 | Minus |
| X | 23542271 | X | 19702742..19703199 | 1017..565 | 2025 | 98.7 | Minus |
| X | 23542271 | X | 19703888..19704019 | 139..8 | 660 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:05:06 has no hits.
UFO02861.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:05:37 Download gff for
UFO02861.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14232-RA | 121..1239 | 1..1104 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:32:51 Download gff for
UFO02861.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14232-RA | 129..1247 | 1..1104 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:47:12 Download gff for
UFO02861.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14232-RA | 129..1247 | 1..1104 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:47:12 Download gff for
UFO02861.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19702733..19703197 | 567..1024 | 98 | <- | Minus |
| X | 19703403..19703830 | 139..566 | 100 | <- | Minus |
| X | 19703889..19704022 | 1..138 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:32:51 Download gff for
UFO02861.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19596766..19597230 | 567..1024 | 98 | <- | Minus |
| arm_X | 19597436..19597863 | 139..566 | 100 | <- | Minus |
| arm_X | 19597922..19598055 | 1..138 | 97 | | Minus |
