UFO02865.5prime Sequence
1117 bp (1010 high quality bases) assembled on 2009-02-18
> UFO02865.5prime
CAGTCGACATGGCAGGCAGGCTACCGGCATGCGTAATCGATGTGGGCACC
GGCTACTCCAAACTGGGATTTGCCGGGAATAAAGAGCCGCAGTTCATTAT
TCCCTCGGCGATTGCCATCAAGGAGTCGGCACGAGTGGGAGACACCAACA
CACGGCGCATCACAAAGGGCATCGAGGACCTGGACTTCTTCATCGGCGAT
GAGGCCTTCGATGCCACCGGCTACTCCATCAAGTATCCGGTGCGTCATGG
TCTGGTGGAGGACTGGGACTTGATGGAGCGCTTTCTGGAGCAGTGCGTCT
TTAAGTATCTGCGCGCCGAGCCTGAGGATCACTACTTCCTGCTGACTGAG
CCGCCGCTAAATACGCCCGAAAATCGGGAGTACACCGCGGAGATAATGTT
TGAGACGTTCAACGTTCCTGGTCTGTATATCGCCGTCCAGGCGGTGCTTG
CCCTAGCCGCCAGTTGGGCCTCCCGGTCCGCAGAGGAGCGTACCCTTACA
GGCATCGTGGTGGACAGCGGCGATGGAGTGACGCACGTCATACCCGTGGC
CGAGGGCTATGTGATCGGCTCCTGCATCAAGCACATTCCCATCGCGGGCC
GCAATATCACCTCGTTCATCCAGAGCCTGCTACGCGAACGGGAGGTGGGC
ATTCCGCCGGAACAGAGCCTCGAGACTGCTAAAGCGATCAAGGAGAAGCA
CTGCTACATCTGTCCCGATATCGCCAAAGAATTTGCCAAGTACGACACGG
AGCCGGGCAAGTGGATACGCAACTTTAGCGGCGTTAACACGGTAACCAAG
GCGCCGTTCAATGTGGACGTGGGCTACGAGCGATTCCTGGGACCCGAGAT
CTTCTTCCATCCCGAGTTCTCAAACCCCGACTTTACCATTCCACTGTCGG
AATAGTGGATAATGTCATCCAAAACTGCCCAATCGATGTGCGGCGTCCTC
TATACATAACATTGTTCTGAGCGGTGATCACGATGTTCAGGACTTCGGCA
GGAGGTGCAGCGAGAATTAAGCGATCGGTGGAACACGTTCTCCGGATCAC
CGAAATTGTCGAAGGACCATAGCAAACCATTTATGTTTCAGTGATTACGC
ACACAATGCAAGTACGC
UFO02865.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:13:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arp3-RB | 1585 | CG7558-RB | 177..1287 | 8..1102 | 5025 | 97.8 | Plus |
| Arp3-RA | 1983 | CG7558-RA | 177..1287 | 8..1102 | 5025 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:13:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8114303..8114794 | 1032..548 | 2095 | 98.4 | Minus |
| 3L | 28110227 | 3L | 8115029..8115346 | 549..232 | 1590 | 100 | Minus |
| 3L | 28110227 | 3L | 8115408..8115589 | 233..52 | 910 | 100 | Minus |
| 3L | 28110227 | 3L | 8115682..8115726 | 52..8 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:13:31 has no hits.
UFO02865.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:59:07 Download gff for
UFO02865.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arp66B-RA | 168..1206 | 1..1032 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:21:00 Download gff for
UFO02865.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arp3-RA | 170..1208 | 1..1032 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:53:59 Download gff for
UFO02865.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arp3-RA | 170..1208 | 1..1032 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:53:59 Download gff for
UFO02865.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8114303..8114793 | 549..1032 | 98 | <- | Minus |
| 3L | 8115030..8115344 | 234..548 | 100 | <- | Minus |
| 3L | 8115408..8115588 | 53..233 | 100 | <- | Minus |
| 3L | 8115682..8115733 | 1..52 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:21:00 Download gff for
UFO02865.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8107403..8107893 | 549..1032 | 98 | <- | Minus |
| arm_3L | 8108130..8108444 | 234..548 | 100 | <- | Minus |
| arm_3L | 8108508..8108688 | 53..233 | 100 | <- | Minus |
| arm_3L | 8108782..8108833 | 1..52 | 96 | | Minus |
