UFO02869.5prime Sequence
903 bp (902 high quality bases) assembled on 2009-02-18
> UFO02869.5prime
CAGTCGACATGGATACGGAGAAGTCTAGCAGCAGCTCCTTCGAGGACCTG
ACCAACGCCGAGGACACCAAAGACATTCGCAAGGTGGCAGCGGAGGAGGC
AGCCTCCGGAGATGGCGCACCCCCGGCATCCGTTTCTGGAGACGGACAGA
AGGCGGAGGAGGAGGATGCAGAGGAGGAATGTGATATACTGGGTAACAAG
CAGCTGATTAAGCGCACCATCAAAAAGGCACCGCAAGACTCGTTTAGGCG
TCCGATTCGCGGCGAATTGGTCACCGTGAACTTCACTGGAAAACTGGACA
ACGGCACGGTGGTCGAGAACGAGTTGAACTTCCAGTGTCACGTGGGAGAC
TACGAGGTTATCCAAGGATTAGATATGGTGTTGCCCATGCTGCAGGTCGG
CGAAGTGTCCCAAGTCAGCGTGGATTCCCGCTTCGGCTACGGCTCCCTAG
GACTGAAAAAAGAGGGTGAATCCGAGTACCTGGTACCACCCGATGCGCAC
CTTACCTACGAAATAGAGCTTCTGGATATCAAATACGAAGAATTTGCGGA
CCTTAAGAGCTTTGAAATACTGCGCAAATATGGTACGCGCAAGAAAGAAC
GTGCCAATTTCTTTTACAAACGCTCGGAGTTCACAACCGCCATTCACCTG
TACAGACGTGCCCTCGACTTTCTGGACAATCGTGATGGGGATCCGGACTC
CGAGTTCGACAAGGAAGACTTGTAGCTCTCGAACAGTGACACGCAGACCC
TGCTAGAGGATCGGTTGATCGTTTACAATAACTTGGCATGACTCAATCAA
GATTGCCGCTTATGACGCAGCTCTGCGTTCCGTGGAGCATGTGCTGCGGT
GCCAGGCAATTAACTCCAAAGCCTTGCATCGCAAAGGAAGAATATTTGAA
GGG
UFO02869.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5482-RD | 1780 | CG5482-RD | 303..1192 | 9..896 | 4310 | 99.1 | Plus |
| CG5482-RC | 1958 | CG5482-RC | 160..1049 | 9..896 | 4310 | 99.1 | Plus |
| CG5482-RB | 1642 | CG5482-RB | 165..1054 | 9..896 | 4310 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18631133..18631624 | 500..9 | 2460 | 100 | Minus |
| 2R | 25286936 | 2R | 18630629..18630939 | 891..583 | 1365 | 97.4 | Minus |
| 2R | 25286936 | 2R | 18630996..18631078 | 583..501 | 415 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:12:38 has no hits.
UFO02869.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:59:04 Download gff for
UFO02869.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5482-RA | 150..1051 | 3..903 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:41:13 Download gff for
UFO02869.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5482-RA | 154..1055 | 3..903 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:57:48 Download gff for
UFO02869.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5482-RB | 159..1060 | 3..903 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:57:48 Download gff for
UFO02869.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18630617..18630938 | 584..902 | 95 | <- | Minus |
| 2R | 18630996..18631078 | 501..583 | 100 | <- | Minus |
| 2R | 18631133..18631630 | 3..500 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:41:13 Download gff for
UFO02869.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14518122..14518443 | 584..902 | 95 | <- | Minus |
| arm_2R | 14518501..14518583 | 501..583 | 100 | <- | Minus |
| arm_2R | 14518638..14519135 | 3..500 | 99 | | Minus |
