UFO02870.5prime Sequence
983 bp (898 high quality bases) assembled on 2009-02-18
> UFO02870.5prime
CAGTCGACATGGGAACCGAGGAGGAGCTGATGTTCCGCAACTTCCAGCGC
CTGAAAAGCTACATCTTCGACGACGAGAAGGTGTCCACCACCACATCCCG
CGAGCAACAAAAGACGGAGAGTTCGGTGGAGAAATGCTTCGACCGCTTCG
AGCAGATAATGTTCACCGACCCGCGCCTCACCCAGATCTTCCGGCTGGAG
CACCAGTACTACCTGGACGCGATGCTGAGGCGGCTGCCGTCCAATTACGA
GTGCCTGGACAGCAGTCGCGCGTGGTGCGTTTACTGGATCCTGCAGGCGG
CCCAGCTACTTAGCTTTAACTTCGACGACCAGACATTGAACCACGTGGTC
CAGTTTCTAAGCAACTGCCGTTCGCCGACTGGGGGTTTTGGAGGAGGACC
TGGACAGTATGCCCATCTGGCGCCCACCTATGCAGCAGTGAACAGTCTGT
GCATCATCGGAAGCGAGCAGGCGTACCGTGCCATAGACCGACCGACTTTG
GTCCAGTTCCTGTTCAGTGTACGTGACTCAGACGGCTCCTTCCGGCTCCA
CGTGGATGGTGAGACGGATGTGCGTGGCGCCTACTGCGCAATCTCCTGCG
CAAAGCTGCTAAATCTTCCCGAGCCAGTGATCAAGGAGCTATTTGCCGGC
ACTGGCGACTGGATAGCCCAGTGTCAGACATACGAGGGAGGATTTGGAGG
AGCCCCTGGTCTGGAGGCCCATGGTGGCTACACCTTCTGCGGAACGCGGG
CCTGGCGCTGCTCAACGAGGCTGATAGTGCGACAGGCAGGCTTTGCTCAA
ATGGACACTGCGCCGTCAGATGACCTACGAAGGCGGCTTCCAAGGGGAAG
AACACGACTGGTTGATGGCTGCTACTCTTCTGGGGGGAACACACCTTCCC
GTAAACAAGGCACGCTATTCGCGTCAAGAGAATGGAGCCCACCGTTTTCA
AGGGTGAGGCCCGGCAGGAATCTCAGCACGGTG
UFO02870.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:45:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17565-RA | 1569 | CG17565-RA | 79..1056 | 2..969 | 4265 | 96.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:45:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16433557..16434072 | 365..877 | 2325 | 98.5 | Plus |
| 3R | 32079331 | 3R | 16433234..16433498 | 104..368 | 1295 | 99.2 | Plus |
| 3R | 32079331 | 3R | 16433076..16433181 | 2..107 | 500 | 98.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:45:01 has no hits.
UFO02870.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:05:40 Download gff for
UFO02870.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17565-RA | 95..999 | 1..900 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:38:27 Download gff for
UFO02870.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17565-RA | 78..982 | 1..900 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:39:40 Download gff for
UFO02870.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17565-RA | 78..982 | 1..900 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:39:40 Download gff for
UFO02870.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16433075..16433181 | 1..107 | 97 | -> | Plus |
| 3R | 16433238..16433494 | 108..364 | 100 | -> | Plus |
| 3R | 16433557..16434097 | 365..900 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:38:27 Download gff for
UFO02870.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12258797..12258903 | 1..107 | 97 | -> | Plus |
| arm_3R | 12258960..12259216 | 108..364 | 100 | -> | Plus |
| arm_3R | 12259279..12259819 | 365..900 | 97 | | Plus |
