UFO02871.5prime Sequence
933 bp (-104 high quality bases) assembled on 2009-01-24
> UFO02871.5prime
CAGTCGACATGGCCAAGGCGAGTAAGAAGGTGGCAGAAAGTAAGCGCATG
AACGGAATCGCCAACGAGAGCGAAAACGAGGAGATTGACCAGCAAAAGTC
CAATGGGACAGGTCGATCGTCCAGGAAGACGCCGAACAAACGAAAGGCCA
AACTGACTGTGGCCTCTGACAGCGAAGACAGCGATTGCCATACCTCTACC
TCCAACGTGGATGTACCAGCTGCAAGGAACAAGCGCAGGGTGGGCAAGGC
CAGGAACGCCACCACTTCGCCCCGCAGAAATGGCAAAAAAATCGTTATAG
AGGATTCGGATGATGATGCTAATCATTCCGATGTAGACCCTAGTGCCGAC
AGTTCGCCAAGGAAGCCAAATATCAAACGCCAGACACGGCGATCCGTGCG
CGGTGAAACGGAAGATAGCAATGAACTGCCCTCCACCTCCAAAGCCTCTG
CACATGCATCAAGTCCGATCAAGAAACGCAAGCTGAGCAGGGCTTCGACT
TCTTCCGTCAAAAATGGCAAGAAGGTTGCTGAGAAGGATTCGGAATCCGA
TGTCGATGCTGGAACAGAGGATGATAAATCAGCTCAACCCCAGAAGGTTG
CAGCTAAATCGAAGTCCTCGCCAAACGCTATTAAGGCTAAGGGACGTGGT
CGACGGAACGGCGGCACCAAGAAAGCCGACGATTCAATCGACCCAGAAAA
GCATGGGAAGTCGAAAAATTCTTGATCACGTTGCCACCAAGGAAGGCGAC
ATGTTTAAAATCCGATGGAAAAATATGGACCGAAGGATGATTCCTGGGAC
CCAATTAAAATCTGGCGTGCGATGCGCTTATCGAAAGTTATGGCGGAAAA
CAAGAACCCACGACACGTGCACGTTTAGGAGCTGCCCGAATCACCAAGAA
CAACCAATCGCCCTGTCGATGAAGGCTTTCCCC
UFO02871.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:47:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8289-RA | 1770 | CG8289-RA | 119..1048 | 9..932 | 3915 | 95.5 | Plus |
| CG8289-RB | 1767 | CG8289-RB | 119..1045 | 9..932 | 3860 | 95.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:47:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17635342..17635926 | 593..9 | 2805 | 98.6 | Minus |
| X | 23542271 | X | 17634633..17634980 | 932..591 | 945 | 88.8 | Minus |
| 2L | 23513712 | 2L | 9788855..9789058 | 635..836 | 425 | 82.8 | Plus |
| 2L | 23513712 | 2L | 9789791..9789906 | 593..478 | 280 | 82.8 | Minus |
| 2L | 23513712 | 2L | 9789914..9790013 | 349..249 | 260 | 86.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:47:50 has no hits.
UFO02871.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:05:39 Download gff for
UFO02871.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8289-RA | 109..973 | 2..860 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:40:09 Download gff for
UFO02871.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8289-RA | 111..975 | 2..860 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:41:02 Download gff for
UFO02871.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8289-RA | 111..975 | 2..860 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:41:02 Download gff for
UFO02871.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17634721..17634977 | 594..845 | 93 | <- | Minus |
| X | 17635342..17635934 | 2..593 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:40:09 Download gff for
UFO02871.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17528754..17529010 | 594..845 | 93 | <- | Minus |
| arm_X | 17529375..17529967 | 2..593 | 97 | | Minus |
