UFO02872.5prime Sequence
1093 bp (1061 high quality bases) assembled on 2009-02-18
> UFO02872.5prime
CAGTCGACATGTCGAAGGACGCGGACGTGGAGCAGGCGACCAAGCCGGAG
AGCGGAGTTGTCCAGGTGGAGCCAGCGATTCCGGAGCAGCCACAGGCCGC
CGTTCCGACCACCATCTCCACGGCGACCACAGTGATCGCGGTGACTAATG
GGGAAAAGCCAGCGGCAGCGACACCAGCAACAACTGCAACACCTGCGACA
GCAGAACAAGTGCAACCTGCAACAACCATCGCTGGCATTGAGTTGGCCAC
TCCAACGGCGGCGGCAACTTCACCACCAACAGGCAGCGGCAAGGCCAACA
TGGATCCAGCGCTGATCAACTTTAAGGTGCTCTATGTGCTCACCCAGCTG
TGCGGCCTGACCATGATCGTCCTGGTGGCCACCTGGATTGGCCAGCACTT
CGGCGGTCTGGCCGGCACCTCAAATCCCGGCGTGGAGTTCAACTGGCATC
CGCTGTTCATGACCATTGGCTTCATTTACCTGTATGGCAACTCCATTCTG
ATCTATCGTGGTTTCCGCACCACGCGCAAGAAGACTCTGAAGCTTACCCA
CGCCGGCATCCACATGGGTGCATTCATTCTGACGGTGATTGCCCTGAAGA
CGGTCTTCGATTCCCACAACTTGGCCAATCCGCCCATTCCCAACATGTAC
TCCCTGCACTCTTGGCTGGGGCTCTCCGCGGTGATCGTCTTCTCGCTGCA
GTATGTGGCCGGATTTGTGGCCTTTTTGGCGCCGGGGTTGAGGGAGAACT
ACAGGATCGCCATGATGCCGCTGCACATCTACTTCGGACTCTTTGGATTC
GTTCTGGCTATTGCTAGTGCCCTGATGGGCATAACCGAGAAGGCCATCTT
CGCCATCAAAACTCCGGCTTACTCCACTCTTCCACCGGCTGGTGTGTTGG
CCAATGTGATTGGAGTAATGTACGTGGTCTTCGGGGCGCTGGTTGTCTAC
CTAGCCACTGAGCCCTCCTACAAGCGGAAGCCCATTCCCGAGGACACGGC
TCTGCTGAACTCCAGTTCTGTCAACAAGGCAAGCTTTCTAGAACAATTCG
TTGGGCGCGCGGGCCAAGGTTAGTGGGTCCATAATCATTATCA
UFO02872.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1275-RA | 1574 | CG1275-RA | 198..1215 | 8..1025 | 5090 | 100 | Plus |
| CG1275-RB | 1698 | CG1275-RB | 322..1339 | 8..1025 | 5090 | 100 | Plus |
| CG1275-RC | 1300 | CG1275-RC | 207..950 | 282..1025 | 3720 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2253329..2253692 | 856..493 | 1820 | 100 | Minus |
| 3L | 28110227 | 3L | 2255538..2255813 | 283..8 | 1380 | 100 | Minus |
| 3L | 28110227 | 3L | 2253777..2253989 | 492..280 | 1065 | 100 | Minus |
| 3L | 28110227 | 3L | 2253103..2253271 | 1025..857 | 845 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 19:55:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2949..2989 | 160..200 | 115 | 75.6 | Plus |
UFO02872.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:05:38 Download gff for
UFO02872.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1275-RA | 194..1223 | 1..1033 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:22:14 Download gff for
UFO02872.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1275-RB | 317..1346 | 1..1033 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:46:04 Download gff for
UFO02872.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1275-RB | 317..1346 | 1..1033 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:46:04 Download gff for
UFO02872.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2253096..2253271 | 857..1033 | 98 | <- | Minus |
| 3L | 2253329..2253692 | 493..856 | 100 | <- | Minus |
| 3L | 2253777..2253986 | 283..492 | 100 | <- | Minus |
| 3L | 2255539..2255818 | 1..282 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:22:14 Download gff for
UFO02872.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2253096..2253271 | 857..1033 | 98 | <- | Minus |
| arm_3L | 2253329..2253692 | 493..856 | 100 | <- | Minus |
| arm_3L | 2253777..2253986 | 283..492 | 100 | <- | Minus |
| arm_3L | 2255539..2255818 | 1..282 | 98 | | Minus |
