UFO02873.5prime Sequence
1105 bp (993 high quality bases) assembled on 2009-02-18
> UFO02873.5prime
CAGTCGACATGTTCGTCAACTCCATGACGTTCCGCGGCAATCCGGCGAAC
TACCACCAGCAGCAGCCGGCCCTGAACCACCACACGCTGGCAGCGGCGCA
CCACCAGCAGCAGCTGCACCACCACGCCGCTGCAGCTGGTCACCTGAGCC
ACGTCGGCGGTGGGCACGCAGCCAGTAACCACCTGGCGGCCGCCGCTGTT
CTCGGACGGCATGGCCACAACTCCCTGGGCAGCGGGCACACGTCCACGTC
CTCGCACTCGGCCAATGTGGGCGTGGGAGTCGGCGGGGGAGCTCTGGCTA
GCGGCTCCACTGGGGGCAGCGGAGGCAACAGCTCTCCGGACAGTGGCAAG
ATCTATATCAAGAACCTGGAGCGGTCCATCGACAACAAGGCGGTGTACGA
CACGTTCTCGGTGTTCGGAAACATCCTAAACTGCAATGTGGCCAAAGACG
AGGATGGCAATTCACGCGGCTATGGGTTTGTGCATTTCGATTCGGAGGAG
GCCGCCCGAGCGGCCATCGAGAAGGTGAATGGGATGCTGTGCAATAATCA
GAAGGTGCATGTGGTCAAGTTCATACCACGGCGGGACCGGGAGCAGGAGA
AGGCCACGCACTTCAAGAATCTGTATGTGAAGAACCTCAGCGAGGAGTTC
ACCGAGCAGCATTTGCGCGAGATGTTCGAGCCCTACGGCCGCATCACCAG
TCACAAGCTCATGCTGGACGAGGAGGGGCGCTCCCGGCGTTTCGGTTTCG
TCGCCTACGAGAACCCACAGTCGGCGCTGGCCGCCGTAATTGGCCTGCAC
GGCAAGCAGCTGGGCGACACAAGTTCTTGTACGTGGCAAGAGCCCTCAGC
AAGGCCGAGCGGCAGCAGAGATCAATCGCAAGCTGGAGAGCGCAAGCGCA
GACGCCGGCAGATATCTACTACGCAAGCTTTCTAGACATTCGTTTGGCGC
GCGGGCCCAGGTAAGTGTCATATCATATCATATCATATCATATCACACTA
GCTAGGAGATCTGTCATGACTAGTGCTGATCTCACCATAAAAAACGCCGG
CGGCACGAGCGTCTGGAACAATCGAATGGAATTCTGGAGGCTATTACTGA
TCTAT
UFO02873.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:12:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4612-RC | 3922 | CG4612-RC | 555..1475 | 9..922 | 4415 | 99.1 | Plus |
| CG4612-RA | 2091 | CG4612-RA | 555..1475 | 9..922 | 4415 | 99.1 | Plus |
| pAbp-RA | 2433 | CG5119-RA | 477..656 | 357..536 | 225 | 75 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:12:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24524774..24525472 | 707..9 | 3495 | 100 | Minus |
| 2R | 25286936 | 2R | 24524349..24524544 | 898..706 | 830 | 98.5 | Minus |
| 2R | 25286936 | 2R | 18143526..18143705 | 357..536 | 225 | 75 | Plus |
Blast to na_te.dros performed 2014-11-28 23:12:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dsim\ninja | 6644 | Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). | 2067..2131 | 207..273 | 114 | 65.7 | Plus |
| aurora-element | 4263 | aurora-element DMAURA 4263bp Derived from AB022762 (d1268008) (Rel. 59, Last updated, Version 1). | 1184..1248 | 207..273 | 114 | 65.7 | Plus |
UFO02873.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:05:33 Download gff for
UFO02873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4612-RA | 552..1484 | 1..927 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:13:35 Download gff for
UFO02873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4612-RA | 547..1479 | 1..927 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:03:08 Download gff for
UFO02873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4612-RA | 547..1479 | 1..927 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:03:08 Download gff for
UFO02873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24524308..24524542 | 708..938 | 93 | <- | Minus |
| 2R | 24524774..24525480 | 1..707 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:13:35 Download gff for
UFO02873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20411831..20412065 | 708..938 | 93 | <- | Minus |
| arm_2R | 20412297..20413003 | 1..707 | 99 | | Minus |
