UFO02874.5prime Sequence
1132 bp (1041 high quality bases) assembled on 2009-02-18
> UFO02874.5prime
TCGACATGACGGTGGATCTATCGCCAGTGCAGGAATACTATAAGGATAAG
ACGATATTCATCACTGGAGCGTCTGGGTTCATGGGCAAGGTTCTGCTGGA
GAAGTTGCTCTACTCCTGCCACTCCCTCAAGGAGGTGATCATCATCTGCC
GCCCGAAGCGCGGCAAGGCACCCGAGACGCGTCTCGAGGAGATGTTCAAG
CTGCCCATCTTCCAGCGCATCAAGGACGAGCGCCCGGAGATGCTCAAGAG
GGTTACCATCTACCAGGGCGACGTCACCTTCGACCAGCTCGGGCTCAGCG
GGGAGAGCTTGAAGCACGTGACCGAGAACACTAACATTGTTTTCCACATG
GCGGCCACCCTTAAGCTGGAGGGCAACCTTCGGGACGCCATCGATATGAA
CTTGCTAGGCACCCGGCGAGCGCTCAACGTGGCCAAGGAAATGAAGCAGC
TGGAGGCCTTCATCCACTTGTCCACGGCTTTTTGCAACTGCGACCAGGAT
GTGATGTATGAGAAGGTGTACGAGTTTCCACACAAGCCGGAGGATCTTAT
GCGCCTGGCCGAGTGGATGGACGTGAAGACCCTGGACGCCATTACGCCGG
ATTTGCTAAAGCCGCACCCCAACACATACACCTACTCAAAGCGTCTGGCG
GAGCTTCTGGTGCGCGACCACTACGAGTCCATGCCCGTCATCATCGCACG
TCCCAGCATCGTGTCGCCGGCTGCCTACGAGCCGTTGCCCGGATGGGTGG
ACAACCTGAATGGACCGACTGGCCTGATGATCGGATGCGGCAAGGGCGTG
ATCCGGTCCGTTCTGGTGAATCAGCAGAACAAGGCCGAGGTGATTCCCGT
CGACTACGCTATCAACGGGCTGATCGTCATTCCCTACGAGTTCAACAGCA
GGCCAAGCGGCCTACCAATGTGCCCGTTTATAATATAACCAATGCGGACA
CAGAAGATGACCATGGGCACCGTTGTGAGATGAGCAAACGCATCAACAGC
AGTTCCATTTAACGCGGGTCTATGTACCCGACCTGCGTACACAACATAAA
CACAACTCACGTGCTCTGGTCATGATGCCGCTACTCTGACTCTGATGCTG
AATTTAGGTCAACGATCATGTTGAAGTCAGAA
UFO02874.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30427-RF | 1739 | CG30427-RF | 112..1143 | 6..1030 | 4985 | 99.3 | Plus |
| CG30427-RE | 2870 | CG30427-RE | 179..1210 | 6..1030 | 4985 | 99.3 | Plus |
| CG30427-RB | 1806 | CG30427-RB | 179..1210 | 6..1030 | 4985 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24934058..24934483 | 711..286 | 2130 | 100 | Minus |
| 2R | 25286936 | 2R | 24934552..24934831 | 285..6 | 1400 | 100 | Minus |
| 2R | 25286936 | 2R | 24930843..24931162 | 1024..711 | 1300 | 98.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:55:53 has no hits.
UFO02874.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:05:32 Download gff for
UFO02874.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30427-RB | 149..1196 | 1..1038 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:22:12 Download gff for
UFO02874.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30427-RB | 174..1221 | 1..1038 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:46:02 Download gff for
UFO02874.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30427-RB | 174..1221 | 1..1038 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:46:02 Download gff for
UFO02874.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24930825..24931161 | 712..1038 | 97 | <- | Minus |
| 2R | 24934058..24934483 | 286..711 | 100 | <- | Minus |
| 2R | 24934552..24934832 | 1..285 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:22:12 Download gff for
UFO02874.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20818348..20818684 | 712..1038 | 97 | <- | Minus |
| arm_2R | 20821581..20822006 | 286..711 | 100 | <- | Minus |
| arm_2R | 20822075..20822355 | 1..285 | 98 | | Minus |
