UFO02879.5prime Sequence
1168 bp (1063 high quality bases) assembled on 2009-02-18
> UFO02879.5prime
CAGTCGACATGTTGACCGAAACCCCCATGGCCAGCGAGAACATCATGGAC
GAACTAGCCTCTCTGATACGCACCGAGATCCCCGATGGCCGCCAGAGTCT
GCGGGACAGCTACACGAACCTGGAGCGGGTGGCCGACTACTGCGAGGACA
CCTACTACCGCGCGGACAACAAGAAGGCGGCCCTGGAGGCCACCAAGAAC
TACACCACCCAGTCGCTGGCCAGCGTGGCCTACCAGATTAACACGCTCGC
CTATAGCTACATGCAGCTCCTCGAGCTTCAGGCCCAGCAGCTCGGCGAGA
TGGAGTCCCAGATGAACCACATCGCCCAGACGGTGCATATCCACAAGGAG
AAGGTGGCCAGGAGAGAGATTGGCGTGCTTACGGCTAACAAGGTGAGCTC
GCGCCAGTTTAAGATCGTGGCGCCCATCAATCCGGAGAAGCCCATCAAGT
ATGTGCGCAAGCCCATCGACTACTCGATGTTGGACGAGATTGGCCACGGC
ATTAACTCGGCCCAGCACTCGCAGGTGCGACAGAAACATCGGGGCTCCAG
CCATGGGTCCGTGCAATCCTTATTGCCGCCGTCGGTGGGACCTCCGCCAA
CCACGAAGCCCCCAACTCCGCCGCAGATGTCGCGAGCTGGGAACACTGGC
ACACTGGGCAAGTCGGTCAGCAATACCGGGACACTGGGCAAGAGTTCGCG
GGAGTACCGCACTCCGCCTGTGGTCAATCCACCACAGGTGCCATCGCACT
ACGCTCCCAACTATCCTATTGGGCATCCAAAGCGAATGTCGACGGCTTCT
TCAACGATGACTACCACCACCACAGGCGGCGGAGCGGCGGGCAATGAACG
AGCTGCTGGCTACAGTGCACTTCCGATGCCACCCAGCCAGCAGATAGCCA
CACATGTAAACCTGCCCTCCGCGGGCATGATGCATCGCTGCCACCACCGC
CGCCCACTACGTACGACGATCGCAGCAGCATGCCACCAGCTCCTCCTTCA
CCACTTACGGTTCGCAGCACGAGATGACCGGAGCAGAGTCCCATTGGCAT
GCACACTTTGGGGACCGCATATCAACAGGAATCACTTCAGCTTGAACTTC
GCTCGGTCAGGCTCCAGTCGCCTCCTTGCCCCCTCGCCCCGCCGGAGGAG
GAACATAAGAACTTCGAG
UFO02879.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:19:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Abi-RF | 2294 | CG9749-RF | 69..1231 | 8..1166 | 5430 | 98.4 | Plus |
| Abi-RB | 2373 | CG9749-RB | 148..1310 | 8..1166 | 5430 | 98.4 | Plus |
| Abi-RA | 2379 | CG9749-RA | 154..1316 | 8..1166 | 5430 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:19:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14120847..14121471 | 986..363 | 3075 | 99.8 | Minus |
| 3R | 32079331 | 3R | 14121746..14122102 | 364..8 | 1785 | 100 | Minus |
| 3R | 32079331 | 3R | 14120710..14120785 | 1062..987 | 270 | 96.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:19:14 has no hits.
UFO02879.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:59:01 Download gff for
UFO02879.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Abi-RB | 142..1272 | 1..1130 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:49 Download gff for
UFO02879.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Abi-RA | 148..1278 | 1..1130 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:49 Download gff for
UFO02879.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Abi-RA | 148..1278 | 1..1130 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:49 Download gff for
UFO02879.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14120695..14120785 | 987..1078 | 93 | <- | Minus |
| 3R | 14120847..14121469 | 365..986 | 99 | <- | Minus |
| 3R | 14121746..14122106 | 1..364 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:49 Download gff for
UFO02879.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9946417..9946507 | 987..1078 | 93 | <- | Minus |
| arm_3R | 9946569..9947191 | 365..986 | 99 | <- | Minus |
| arm_3R | 9947468..9947828 | 1..364 | 98 | | Minus |
