UFO02881.5prime Sequence
1171 bp (1036 high quality bases) assembled on 2009-02-18
> UFO02881.5prime
CAGTCGACATGACGACCAGCATTCCACAAGGCACTCTCTTGGACGTGCTG
AAGAAGAAGATGCGCCAGACCAAAGAGGAGATGGAGAAGTATAAAGACGA
GTGCGAGGAGTTCCACAAGCGGCTGCAGTTGGAGGTGGTGCGCCGCGAAG
AAGCCGAATCCGAGGTTGCCGCTCTGAACCGTCGCATCCAGTTGCTCGAA
GAAGACTTGGAGCGCTCTGAGGAGCGTCTGGGCTCCGCCACAGCCAAGCT
GTCGGAAGCCTCTCAGGCCGCCGATGAGAGCGAACGGATACGAAAAGCGC
TTGAGAATCGCACAAATATGGAAGATGACAAAGTAGCTCTCTTGGAGAAC
CAGTTAGCGCAAGCAAAATTAATTGCAGAAGAAGCTGATAAGAAATACGA
AGAGGTGGCCAGAAAACTCGTGCTCATGGAACAGGATCTGGAGCGTTCCG
AGGAGAAGGTCGAGCTCAGCGAAAGCAAAATTGTGGAGCTTGAGGAGGAG
CTGCGCGTGGTTGGCAACAACCTGAAGTCCCTGGAAGTCTCTGAGGAGAA
GGCCACACAAAAAGAGGAGACCTTTGAGACGCAAATCAAAGTATTGGATC
ATTCTCTGAAAGAGGCTGAGGCTCGTGCTGAGTTCGCTGAACGCTCCGTT
CAGAAATTGCAGAAGGAAGTCGACAGGCTCGAAGATGACCTGCTCAACGT
GCGGGGCAAGAACAAACTGCTGCAGGAGGAAATGGAGGCCACCTTACATG
ACATACAGAACATGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCC
CAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTA
GCCTAGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAA
CGCCCGGCGGCAACCGAGCGTTCTGAACAATCCAGATGGAGTTCTGAGGT
CATTACTGGATCTATCACAGGGAGTCCAGCGAGCTCGATATCAAATTACG
CCCCCGCCCTGCCACCCCATCGCCAGTACTGTTTGTAATTCATTAAGCCA
TTCTGGCCCAACATGGAAGCCATCACAACCGCCATGGATTGAAACCTGAT
TCGCCAGCGGATTCAGACACTGGTCGCCTTTGCGTATATATATTTGGCCA
ATGGGGTGAAAAACCGGGAGG
UFO02881.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:58:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tm1-RA | 2003 | CG4898-RA | 439..1194 | 9..764 | 3780 | 100 | Plus |
| Tm1-RL | 2194 | CG4898-RL | 331..942 | 153..764 | 3060 | 100 | Plus |
| Tm1-RQ | 1318 | CG4898-RQ | 437..1113 | 9..685 | 2965 | 96 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:58:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15291382..15291526 | 9..153 | 725 | 100 | Plus |
| 3R | 32079331 | 3R | 15295113..15295247 | 153..287 | 675 | 100 | Plus |
| 3R | 32079331 | 3R | 15295426..15295546 | 286..406 | 605 | 100 | Plus |
| 3R | 32079331 | 3R | 15303639..15303720 | 683..764 | 410 | 100 | Plus |
| 3R | 32079331 | 3R | 15300745..15300823 | 474..552 | 395 | 100 | Plus |
| 3R | 32079331 | 3R | 15300104..15300180 | 399..475 | 370 | 98.7 | Plus |
| 3R | 32079331 | 3R | 15303151..15303222 | 613..684 | 360 | 100 | Plus |
| 3R | 32079331 | 3R | 15301622..15301687 | 550..615 | 330 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:58:07 has no hits.
UFO02881.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:59:00 Download gff for
UFO02881.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tm1-RA | 437..1195 | 9..768 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:12:38 Download gff for
UFO02881.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tm1-RA | 439..1197 | 9..768 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:31:19 Download gff for
UFO02881.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tm1-RA | 439..1197 | 9..768 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:31:19 Download gff for
UFO02881.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15291382..15291525 | 9..152 | 100 | -> | Plus |
| 3R | 15295113..15295246 | 153..286 | 100 | -> | Plus |
| 3R | 15295427..15295544 | 287..404 | 100 | -> | Plus |
| 3R | 15300110..15300180 | 405..475 | 100 | -> | Plus |
| 3R | 15300747..15300822 | 476..551 | 100 | -> | Plus |
| 3R | 15301624..15301686 | 552..614 | 100 | -> | Plus |
| 3R | 15303153..15303222 | 615..684 | 100 | -> | Plus |
| 3R | 15303641..15303723 | 685..768 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:12:38 Download gff for
UFO02881.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11120835..11120968 | 153..286 | 100 | -> | Plus |
| arm_3R | 11121149..11121266 | 287..404 | 100 | -> | Plus |
| arm_3R | 11125832..11125902 | 405..475 | 100 | -> | Plus |
| arm_3R | 11126469..11126544 | 476..551 | 100 | -> | Plus |
| arm_3R | 11127346..11127408 | 552..614 | 100 | -> | Plus |
| arm_3R | 11128875..11128944 | 615..684 | 100 | -> | Plus |
| arm_3R | 11129363..11129445 | 685..768 | 97 | == | Plus |
| arm_3R | 11117104..11117247 | 9..152 | 100 | -> | Plus |
