UFO02882.5prime Sequence
1135 bp (1025 high quality bases) assembled on 2009-02-18
> UFO02882.5prime
CAGTCGACATGATGAGCAGCAGAACGCAGGACGCGGACGGTGCCTCGATC
AGATTCAGCGACCACACACTGGACAAGGCCACCAAGGCCAAGGTGACGTT
GGAGAACTACTACAGCAACCTGGTGACGCAGTATGGCGAGCGAAAGCAGC
GCCTCGCAAAGCTGGAGGCTCAGCTGAAGGACGAGAGCTTGTCGGAGGCG
CAGCGCCAGGAGAAGCGTCTGCAGCATGCCCAGAAGGAGACGGAGTATCT
CCGGCTGAAGCGATTGCGCCTCGGTGTGGAGGACTTTGAGGCCCTCAAAG
TCATCGGACGCGGCGCGTTCGGTGAAGTGCGTTTGGTGCAGAAAAAGGAC
ACGGGACATGTGTACGCCATGAAGGTGCTGCGCAAAGCGGACATGCTGGA
AAAGGAGCAGGTGGCACACGTACGAGCCGAGCGCGATGTCCTGGTCGAGG
CCGATCATCAGTGGGTGGTGAAGATGTACTACAGTTTCCAGGATCCCGTC
AATTTATATTTGATAATGGAGTTCTTGCCTGGTGGTGATATGATGACGCT
TTTGATGAAGAAGGACACGCTATCCGAGGAGGGCACACAGTTCTATATCA
GTGAGACGGCATTGGCGATCGATTCTATTCACAAACTCGGTTTCATACAC
AGGGATATCAAGCCCGATAACTTGCTGCTGGACGCGCGAGGGCATCTGAA
GCTCTCCGACTTCGGACTGTGCACTGGCTTAAAGAAGTCGCATCGAACAG
ACTTTTAACGGGACTTGTCGCACGCGAAACCATCCGATTTTATAGGCACG
TGCGCCAGTCCGATGGACTCCAAGCGACGTGCCGAGTCGTGGAAGCGAAA
TCGACGCGCCCTCGCCTACAGCACCGTGGGAACGCCCGGACTATATTGCA
CCCGAAGTATTTCTGCAGACTGGCTACGGACCCGCCTGCGACTGGTGTCC
CTGGGAGTCATCATGTACGAAATGCTGATGGGCTTATCCTCCATTCTGCT
CGACAATCCCCCAGACACCTACCGCAAGGTGATGGACTGGGCGCGGAGAA
CGCTGATATTTCCCCGAGAATTCCCATATTCGGGAGGAGGCCCAAGGAAA
CGATCATCAACCTTCTGTTGCAAGGCCGAATCGCC
UFO02882.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:20:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| trc-RA | 2277 | CG8637-RA | 213..1332 | 9..1135 | 5175 | 98 | Plus |
| trc-RB | 2816 | CG8637-RB | 213..1344 | 9..1135 | 5045 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:20:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19833609..19834092 | 492..9 | 2420 | 100 | Minus |
| 3L | 28110227 | 3L | 19832934..19833146 | 701..489 | 1065 | 100 | Minus |
| 3L | 28110227 | 3L | 19832398..19832715 | 1129..806 | 945 | 91.7 | Minus |
| 3L | 28110227 | 3L | 19832770..19832878 | 808..700 | 515 | 98.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:20:23 has no hits.
UFO02882.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:59:03 Download gff for
UFO02882.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trc-RA | 201..1328 | 1..1135 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:56:59 Download gff for
UFO02882.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trc-RA | 205..1332 | 1..1135 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:57:57 Download gff for
UFO02882.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trc-RA | 205..1332 | 1..1135 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:57:57 Download gff for
UFO02882.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19832393..19832712 | 809..1135 | 93 | <- | Minus |
| 3L | 19832770..19832876 | 702..808 | 98 | <- | Minus |
| 3L | 19832934..19833143 | 492..701 | 100 | <- | Minus |
| 3L | 19833610..19834100 | 1..491 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:56:59 Download gff for
UFO02882.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19825493..19825812 | 809..1135 | 93 | <- | Minus |
| arm_3L | 19825870..19825976 | 702..808 | 98 | <- | Minus |
| arm_3L | 19826034..19826243 | 492..701 | 100 | <- | Minus |
| arm_3L | 19826710..19827200 | 1..491 | 99 | | Minus |
