UFO02884.5prime Sequence
1060 bp (983 high quality bases) assembled on 2009-02-18
> UFO02884.5prime
CAGTCGACATGCCACCCACGATCAACAATTCGGCGGTAAACAGTGCCGCC
GAAAAGCGACCCCAGCGGCAAACGGAGCGCAAATCCGAGATCATTTGCCG
CGTGAAGTATGGAAACAACCTGCCGGATATACCATTTGATCTGAAGTTTC
TGCAGTACCCCTTCGACAGCCACCGCTTCGTGCAGTACAACCCAACGTCG
CTAGAGCGTAACTTCAAGTATGACGTGCTGACGGAACACGATTTGGGTGT
CACGGTGGACCTGATTAACCGGGAGCTCTATCAGGCCGACTCCATGACGC
TGCTGGACCCCGCCGATGAAAAACTGCTGGAGGAGGAGACTCTGACGCCC
ACAGACTCTGTGCGTTCGCGCCAGCATTCGAGGACGGTGTCATGGTTGCG
CAAATCCGAGTACATCTCCACCGAGCAGACGCGCTTCCAGCCCCAGAACC
TGGAGAACATCGAGGCCAAGGTCGGTTACAACGTCAAGAAGTCGCTTCGG
GAGGAGACTCTCTACCTGGACCGCGAAGCCCAGATCAAAGCCATCGAGAA
GACCTTCAGCGACACCAAGAGCGAAATTACCAAGCACTATTCCAAGCCCA
ATGTGGTGCCAGTGGAGGTACTGCCTATCTTCCCCGACTTCACCAACTGG
AAGTTCCCGTGCGCCCAGGTCATATTTGACAGTGATCCCGCTCCTGCGGG
CAAGAACGTGCCCGCCCAGCTGGAGGAGATGTCGCATGCCATGATTCGTG
GTGTGATGGACGAGAGCGGCGAACAGTTTGTCGCCTACTTCCTGCCCACA
GAGCAGACGCTGGAGAAACGCCGTACAGACTTCATCAATGGCGAGCTGTA
CAAGGAGGAGGAGGAGTACGAGTACAGATCGCTCGAGAGTACAACTGGAA
CGTGAGACCAAGCTTCCAAGGCTACGAGAAACTACTTCTCGTGATGCGTC
AGACGGCATCTACTACACGAGCTAGAAACCCGTGTGCGCTACAGCGTCGC
GTTAGGTGGCCAGCCACCCAACAACACCAAGCTGGTTGTCAGCATCGTCC
ATTGGGACGC
UFO02884.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:24:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| atms-RB | 2040 | CG2503-RB | 373..1435 | 9..1055 | 4895 | 98.3 | Plus |
| atms-RA | 1769 | CG2503-RA | 102..1164 | 9..1055 | 4895 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:24:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4775834..4776806 | 79..1036 | 4170 | 97.6 | Plus |
| 3R | 32079331 | 3R | 4775706..4775779 | 9..82 | 370 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:24:08 has no hits.
UFO02884.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:05:34 Download gff for
UFO02884.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| atms-RA | 98..1173 | 1..1060 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:59:50 Download gff for
UFO02884.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| atms-RA | 94..1169 | 1..1060 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:00:16 Download gff for
UFO02884.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| atms-RA | 94..1169 | 1..1060 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:00:16 Download gff for
UFO02884.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4775698..4775779 | 1..82 | 95 | -> | Plus |
| 3R | 4775838..4776804 | 83..1034 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:59:50 Download gff for
UFO02884.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 601420..601501 | 1..82 | 95 | -> | Plus |
| arm_3R | 601560..602526 | 83..1034 | 98 | -> | Plus |
