UFO02888.5prime Sequence
1146 bp (1033 high quality bases) assembled on 2009-02-18
> UFO02888.5prime
CAGTCGACATGGATTCGAAGTTCTTTAAACTGCTCCTGCTGGGCGGCGCC
GTGCGCTTCTACTTCTGTCGCACGCCGCTGGCTCCGATGATTGGCAACCG
AGTGGAGTTCGCGACACCTTTAAATTCACACAAGCGCATGCAAGAGGGGA
TATTTCTTCTACAGAGTGGCATTGATCCCTATCTGGGCGACCTGGTACAC
GAATCGCCGCTGATACTCAGCGCGCTCTCCGGATTGTTTCAAAAATACCC
GCAGTTTCTGCCGATATTCTACATAATCCTGGATATCTGCACGGCGGCCC
TGCTTTATGCGATGAGTCTGAGATTCGTCAAGCAAAAGCAGGATCAGCAG
GACAAGGAGCGAAAGGAGTATGCCAAGGATACGGAAGAGCTGCAGTTTGG
CCCGCTGGACAAGCTTGACATTCCGGAACTTGTGATCGTGGCATATCTTT
TCAGTCCACTGACTGTTATGAGCTGCATTGGAATGACCTCCACCGTGATA
AGCAATCTGTTCCTGGCTTTCTTTTTCTACTGCCTCGTGAAGGGAATGCT
CATTCCATGCCTTCTAGTCCTCGCGTTCGAAACTGTCCGCAGCTTCTATC
CCATTGTACTTATAGCACCACTGCTCCTGGTCTTTTCACGGAATTCGGTC
AGGAGGGGTGTGGCTATAGCGGCGCTCTTTATCGTCAGTTGTCTAATCGT
GGCAGTTGCGAACTATTTTGTGCTGAACAGCTGGAACTTCCTGGGATGGA
ACGTTGGGTTTTATATTTTATTTCCGCGATCTACAGCCAAATATCGGTCT
CTTCTGGTACTTTTTTACTGAAATGTTTGAGCACTTCCGCACCATGTTCC
TAATCACATTCCAATTGAATGCCACCGTATTATACCTGGTGCCACTAAGT
ATTAAGCTGCGCAAGGAGCCCTACTGCTAGCCACGGTATTGGTGGCCCTT
ATGGCCGTTTTAGGCGTATCCCAGCCTGGGCGATGTCGGCTTTTATCTGG
CCTTGCTTCGCTGTGAAAAGATGTTGAAATTCATGACCATGCTTTGTGTC
TTACGTCTTCTGTCCATCTATCTATGATGGAAGCCCTTGGCAATTTGGAT
CATGCAGGATCGGCAATGCAAATTTCTATTTCCGGGCCAACTTCTT
UFO02888.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:20:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PIG-U-RA | 1478 | CG13089-RA | 58..1204 | 9..1139 | 5170 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:20:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8515343..8515967 | 139..764 | 3080 | 99.8 | Plus |
| 2L | 23513712 | 2L | 8516030..8516277 | 765..1009 | 1110 | 98.4 | Plus |
| 2L | 23513712 | 2L | 8515153..8515282 | 9..138 | 650 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 19:20:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| springer | 7546 | springer SPRINGER 7546bp Derived from BACR06P08 by Sue Celniker, 29 March 2001. | 3472..3534 | 270..206 | 122 | 67.7 | Minus |
UFO02888.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:03:35 Download gff for
UFO02888.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13089-RA | 56..1207 | 9..1146 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:22 Download gff for
UFO02888.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PIG-U-RA | 58..1209 | 9..1146 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:13:16 Download gff for
UFO02888.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PIG-U-RA | 58..1209 | 9..1146 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:13:16 Download gff for
UFO02888.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8515153..8515282 | 9..138 | 100 | -> | Plus |
| 2L | 8515343..8515967 | 139..764 | 99 | -> | Plus |
| 2L | 8516030..8516301 | 765..1030 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:22 Download gff for
UFO02888.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8515153..8515282 | 9..138 | 100 | -> | Plus |
| arm_2L | 8515343..8515967 | 139..764 | 99 | -> | Plus |
| arm_2L | 8516030..8516301 | 765..1030 | 97 | -> | Plus |
