UFO02891.5prime Sequence
1120 bp (1008 high quality bases) assembled on 2009-02-18
> UFO02891.5prime
CAGTCGACATGAGGCTGCAGCTCTTCTTTTTTCTCGGCCTGAGTGTTCTA
GTCAGTGGAGGAGAATCCTCACACGATGCCGAGAGGCGAATGCATCCGGT
GTTCTCGCTTATGGGAACCGGATCGAATCCAATCGGAGGAGGTCGATACA
AGCGAGCCATGCCCCAGATCGTTTTTGATGCCGTAAGATCAGAGGAGCGG
TACGCCGAGTACTGGCAGGGTTTGGCGGCCCAAACACTGGATCAGCAGCT
GGAGAGTAAGCTGCGATTGAACACCCAGCTGGCCAGGAATGTGATGCTCT
TCATTGGCGACGGCATGTCCATACCGACAATCACGGCGGGTCGCGTTTAC
TTGGGCGGCGAGGAGAAGCAGTTCGCCTTCGAGCAATTCCCGTATGTGGG
TCTCAGCAAGACCTACTGTGCCAATATGCAGGTGGCCGACTCCGCCTGCA
CCGCCACCGCCTATTTGGGTGGTGTCAAGGCCAACTATGGCACGATCGGA
GTAAGTGCAGCGGTGCAGTTCAAGGATTGCCAGGCGCAGGCACAAGCCGC
CCACCATGTCTCCTCCATTGCGGCCTGGGCGCAGAAGCAGGGAATGGCCA
CCGGACTGGTTACCACAACCTCCGTAACACATGCCTCACCAGCTGGAGTG
TACGCCCACCTGGCCAACCGGAACTGGGAGAACGACGCCGAAGTGGTGGG
AGACAATGGTGACCCCGATCTGTGTCCGGACGCAGCTGCCCAGCTGATAA
ACAGTCCGGTGGGTCAGAAACTTAATGTGATAATGGGCGGAGGTCGCGAG
AATTTCCTGCCCAAAGGCGTGACTGATTCCAGTGGAGCGCCTGGTCGCCG
TTTGGATGGCCGCAATCTCATCGACGAGTGGAAGACCAGCACACGAACAG
TGCTCATATGTGGAGAATCGCAGGAGCTGCTCAACCTATCCATCACACTT
CACGAGTACTGGGCTTGTTTGCCCCTACACATGCTACATCTGGATGCTAG
TCCAGCAGAGCACTACGCTGGAGGAGATGGTCCAGTCGGCCATGAAATCT
GGAGCGCAGAGTGCCGACGCCGTTACTTCTTTTTCTGGGAGGGCGGTCGG
AATCGAATCATGGTACACGA
UFO02891.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8147-RA | 1862 | CG8147-RA | 88..1206 | 9..1114 | 5125 | 98 | Plus |
| CG3264-RB | 2182 | CG3264-RB | 414..552 | 377..515 | 260 | 80 | Plus |
| CG3264-RA | 1737 | CG3264-RA | 414..552 | 377..515 | 260 | 80 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9495002..9496056 | 62..1101 | 4525 | 97.9 | Plus |
| 3R | 32079331 | 3R | 9494888..9494942 | 9..63 | 275 | 100 | Plus |
| 2R | 25286936 | 2R | 9562517..9562606 | 407..496 | 225 | 83.3 | Plus |
| 2R | 25286936 | 2R | 22210152..22210258 | 515..409 | 220 | 80.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:12:37 has no hits.
UFO02891.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:03:33 Download gff for
UFO02891.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8147-RB | 66..1193 | 2..1119 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:06:45 Download gff for
UFO02891.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8147-RA | 82..1209 | 2..1119 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:39 Download gff for
UFO02891.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8147-RA | 82..1209 | 2..1119 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:41:39 Download gff for
UFO02891.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9494882..9494942 | 2..63 | 93 | -> | Plus |
| 3R | 9495004..9496070 | 64..1119 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:06:45 Download gff for
UFO02891.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5320604..5320664 | 2..63 | 93 | -> | Plus |
| arm_3R | 5320726..5321792 | 64..1119 | 97 | | Plus |
