UFO02894.5prime Sequence
1102 bp (998 high quality bases) assembled on 2009-02-18
> UFO02894.5prime
CAGTCGACATGGAGACACCCATGGCCGATGACCTGTTGCAGTTCCGCGAC
TACAGCGGCGGTGCCCCGGCCCAAATCAATGTCAATTCCCCTACGCACGG
CGGATCGGGTGGTTCTGGTGGTGGCTCTGCTGGTTCCGGCGGCTCCGTTG
GCGGTGGTGGTGCCAACGCACAGCGTCAACGCGGCGATCCGCTGGCGGAT
CTCATCTATGACATGACCTCCTCGGCCCAGGGATTCTCCGGAGCTGCATC
CTCGGGCGGCTCCCAGCCGCAGAACTCATCGCTGGACGGATCCGCCGGCG
GTGGAGGCGGTGGTGCGAAACTATCACTGTTTACGATCGAGTACTACCAG
CAGTTCTTCAACGTGGACACCTATATGGTGCTCGAGCGAATCGCCAACTC
CATGATACCCAAACGGGCCTCTGGCAACTATCTGCGCATGAACATCGGCG
AGAATCCGGATCTATATGGACCCTTCTGGATAACCGTCACCCTGATCTTT
TCCATAGCAATAAGTGGTAATATTGCCAGCTATTTGCAGCAAGCCACTGA
TGCGTACAAATGGCACTACAACTTCCATCTGGTCTCCTATGCGGCTACGT
CCATCTTCTTGTATGCCAATATCTTGCCAGCCGTTCTGTGGGCCCTCTTC
AAGTACAGCCTGAAGCCTGTGGACTCCGCTGATGCCGTGGAAACGGACAG
CGCCAGCTACATGCCGAGCCTCTTGTCGCTGATGTGCATCTATGGATACA
GTTTGGCCATTTATATACCAGTCTCCATTCTCTGGGTGATCAATATCTCT
CTGCTGCAGTGGCTCCTGGTGATCACCGCCGCCTTGCTTTCGGGCACGGT
TTTGATTGCGGTGCTAACGCCAGCGCTGCGCAACTCGCAATTCTCGCTGT
TCCTCATCGTTGGAATCCTGAGTGCACATGTGTGCTGGCCGCCGGATTTC
TGCTCTATTTCTTTCACATCCCACAGTCCCGTCGCTGGATCAGTTGCTCG
ACCCAGCCTGCACTGCTGCTCGCTGCTCTGAAGCTGACGCAGCGTTGTCA
CGCAATGCCGGCATCGACCCCACGCAAGCTTTCTAGGAACAATTCGATGG
GC
UFO02894.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:19:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4645-RB | 1415 | CG4645-RB | 145..1208 | 9..1059 | 4955 | 98.5 | Plus |
| CG4645-RC | 1588 | CG4645-RC | 145..1208 | 9..1059 | 4955 | 98.5 | Plus |
| CG4645-RA | 1521 | CG4645-RA | 251..1314 | 9..1059 | 4955 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:19:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12910203..12910688 | 9..494 | 2430 | 100 | Plus |
| X | 23542271 | X | 12910752..12910960 | 494..702 | 1045 | 100 | Plus |
| X | 23542271 | X | 12911413..12911611 | 795..991 | 895 | 99 | Plus |
| X | 23542271 | X | 12911024..12911116 | 702..794 | 465 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:19:10 has no hits.
UFO02894.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:58:59 Download gff for
UFO02894.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4645-RA | 243..1281 | 1..1032 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:46 Download gff for
UFO02894.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4645-RA | 243..1281 | 1..1032 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:46 Download gff for
UFO02894.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4645-RA | 243..1281 | 1..1032 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:46 Download gff for
UFO02894.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12911413..12911611 | 795..991 | 98 | == | Plus |
| X | 12910195..12910688 | 1..494 | 99 | -> | Plus |
| X | 12910753..12910959 | 495..701 | 100 | -> | Plus |
| X | 12911024..12911116 | 702..794 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:46 Download gff for
UFO02894.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 12805446..12805644 | 795..991 | 98 | == | Plus |
| arm_X | 12804228..12804721 | 1..494 | 99 | -> | Plus |
| arm_X | 12804786..12804992 | 495..701 | 100 | -> | Plus |
| arm_X | 12805057..12805149 | 702..794 | 100 | -> | Plus |
