UFO02896.5prime Sequence
1061 bp (1035 high quality bases) assembled on 2009-02-18
> UFO02896.5prime
CAGTCGACATGATGCAGCCAAGTGCGGTATTACTAACCACAATTATGATC
ATCTCCTGCGAAGTGGCATTCGCCTGCAATGGAAAGATAATTGCATCGGG
CATCACGGCGGAAGAGAGATCAATCATCTTGCAGGAGCACAATCGCCTCC
GGCAGATCGTGGCCACGGGTCGCTATCCAGGCCAGCCGGGTGCCGAGAAT
ATGCGGGAGATCGTCTGGGACGATGAGCTGGCCGCCAGAGCTCAGAAATG
GGCTGACAACTGCCAGTTCCGTCACGATCCGCACCGTACAATAAATCGCT
TTACGATGGGCCAGAATCTGGCCATCATCTGGAGTACGGCGCCTTTGGAT
GCCGATGACGGTGATTTCCCCTCTCGCATCCAGAGTTGGTTTAACGAGGT
GCAGAAGTACTCCTTCGGGGACGCCTGGTCCCCCAAAACTGGACACTATT
CCCAACTGGTTTGGGGTGAGACCAGCTTGGTGGGCTGTGGATATGCGGAG
TACAAGGATACCAGCAAGTACAACAAGCTCTACGTCTGCAATTATGGGCC
TGGTGGCAATGTGGTGGGCTACAATCCCTATGAGGTTGGAAAGCCATCGT
GCTCCACATACGGCATGAAGCCTTCGTCCCGCTACCAAGGACTCTGCGCC
GCTCCCGGATCCTCGCCAGCGGCCAACAGCGTTTACGGAGCAAACACAAT
TGAAACGTATGAGTACGGCTACAACAGCAGCCCTTCCAGTCAAACCGCCA
ATAACAATCCGCCGACTAACAACATTAACAAGAGCCAGTTCAGCTATAAC
CAACCAAGACCCAAGCCCGTCCAAACCATCAATCCAAATCCCTCCCCATT
CAACCCACAGGCAGCGGTACCATCAGCGTCGACCTTCGGCGGCAGTTCGT
TTGGCAGCGCCTCGAGGGGCGGCAGCCACGCCTACACCACGGACCCATCG
CAGTCGGCAGGCCGCTATAGCACAAGCTCGAGGCGTATCGGGCCAGTGCG
GCCGAGTTCGAGAAGTCCGTACCCAAGCCATACCATTACCTACGCCACCT
TTATTAGAGCA
UFO02896.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:29:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8483-RA | 1869 | CG8483-RA | 288..1336 | 9..1061 | 5060 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:29:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13209315..13209791 | 1028..553 | 2290 | 99.2 | Minus |
| 3R | 32079331 | 3R | 13210071..13210329 | 553..295 | 1295 | 100 | Minus |
| 3R | 32079331 | 3R | 13210897..13211098 | 294..93 | 1010 | 100 | Minus |
| 3R | 32079331 | 3R | 13214094..13214178 | 93..9 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:29:20 has no hits.
UFO02896.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:03:37 Download gff for
UFO02896.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8483-RA | 288..1335 | 9..1060 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:51 Download gff for
UFO02896.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8483-RA | 288..1335 | 9..1060 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:04 Download gff for
UFO02896.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8483-RA | 288..1335 | 9..1060 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:04 Download gff for
UFO02896.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13209288..13209790 | 554..1060 | 98 | <- | Minus |
| 3R | 13210071..13210329 | 295..553 | 100 | <- | Minus |
| 3R | 13210897..13211097 | 94..294 | 100 | <- | Minus |
| 3R | 13214094..13214178 | 9..93 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:51 Download gff for
UFO02896.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9035010..9035512 | 554..1060 | 98 | <- | Minus |
| arm_3R | 9035793..9036051 | 295..553 | 100 | <- | Minus |
| arm_3R | 9036619..9036819 | 94..294 | 100 | <- | Minus |
| arm_3R | 9039816..9039900 | 9..93 | 100 | | Minus |
