UFO02906.5prime Sequence
1174 bp (1051 high quality bases) assembled on 2009-02-18
> UFO02906.5prime
CAGTCGACATGTCGGTCAGACTGAACGAGACGACGACCATTGTTGACCGG
ATGGTCAACTTCTTCGTGGAGCACGAGGATCTGCGCACCAAGCAATGGTT
CCTTTCGAATGCCCCCGGACCGCTGTTCATGATCCTTGGAGCCTACCTGT
ACTTCTGCCTGTACGCAGGACCTCGTTACATGCGCGATCGCAAGCCCTTC
GAGCTGAAGAACACTCTCCTGGTCTACAATGCGGTCCAAGTGCTCCTCAG
CTGGGTGCTCTTCTACGAGGGATACAAGGGCGGCTGGGGTGGCCACTACA
ACTTCAAGTGCCAGCCGGTGACTTACGAATCGGATCCGATTTCCATGAGG
ATGGCTCGTGCCGTGTGGCTGTACTACATTGCCAAGATCACGGAGCTGTT
GGACACCGTGTTCTTTGTGCTGCGCAAGAAACAGCGCCAGATCTCCTTCC
TCCACTTGTACCACCACACTCTGATGCCCGTGTGTGCCTTCATTGGGGTC
AAGTACTTTGCCGGTGGCCATGGAACCCTTCTGGGATTCATTAACTCCTT
CATCCACATCATTATGTACGCCTACTACCTGCTCTCCGCGATGGGACCCA
AGGTGCAAAAGTATCTGTGGTGGAAGAAGTACATCACCATCCTGCAGATT
GTCCAATTCCTGATCATCTTCGTGCACACACTGCAAATCCAGTTCCAGCC
CAACTGCAACTTCCCCAAGTCCATTGCCGCACTCCTGACCTTCAATGCTG
GACTCTTCACCTATATGTTCAGCGCCTTCTATGTGGCCAACTACAAGAGG
AGGCGGCTGCCCAGGCCAAGCTGGCGGCGAAAAAGGAGGCAAGCTTTCTA
GACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCA
TAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAG
TGCTTGGATTCTCCCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGA
ACAATCAGATGGGAGTTCTTGAGGTCATTACTGGATTTTATCAACAGAGT
TCAGGCGAGCCTCGAAATCAAAATAACGCCCCGCCTTTCCACTCATCGCC
AGAGTACGTGTTGTAAATTCTTTAGCATTTCTGCCGACAATGGAAGACAC
TCCAAACGCCATGATGACCTGGTA
UFO02906.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5326-RA | 1694 | CG5326-RA | 320..1150 | 9..838 | 4130 | 99.9 | Plus |
CG5278-RA | 1722 | CG5278-RA | 526..804 | 381..659 | 420 | 77.6 | Plus |
CG2781-RA | 1974 | CG2781-RA | 921..1042 | 511..632 | 290 | 83.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22532967..22533269 | 652..350 | 1515 | 100 | Minus |
3R | 32079331 | 3R | 22533336..22533595 | 350..91 | 1300 | 100 | Minus |
3R | 32079331 | 3R | 22532718..22532906 | 838..651 | 895 | 99.5 | Minus |
3R | 32079331 | 3R | 22533684..22533767 | 92..9 | 420 | 100 | Minus |
3R | 32079331 | 3R | 22559611..22559879 | 649..381 | 415 | 77 | Minus |
3R | 32079331 | 3R | 7982865..7982954 | 632..543 | 285 | 87.8 | Minus |
3R | 32079331 | 3R | 9813349..9813433 | 383..467 | 215 | 83.5 | Plus |
3R | 32079331 | 3R | 9816469..9816540 | 467..396 | 210 | 86.1 | Minus |
3R | 32079331 | 3R | 4444113..4444219 | 649..543 | 205 | 79.4 | Minus |
3R | 32079331 | 3R | 22555689..22555773 | 555..639 | 185 | 81.2 | Plus |
Blast to na_te.dros performed 2014-11-28 20:17:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmir\worf | 4174 | Dmir\worf WORF 4174bp Derived from AY144572. | 814..889 | 652..728 | 121 | 65.4 | Plus |
UFO02906.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:03:28 Download gff for
UFO02906.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5326-RA | 314..1160 | 1..844 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:43:11 Download gff for
UFO02906.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5326-RA | 312..1158 | 1..844 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:01:12 Download gff for
UFO02906.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5326-RA | 312..1158 | 1..844 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:01:12 Download gff for
UFO02906.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22533336..22533593 | 93..350 | 100 | <- | Minus |
3R | 22533684..22533775 | 1..92 | 96 | | Minus |
3R | 22532710..22532906 | 651..844 | 97 | <- | Minus |
3R | 22532969..22533268 | 351..650 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:43:11 Download gff for
UFO02906.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18358432..18358628 | 651..844 | 97 | <- | Minus |
arm_3R | 18358691..18358990 | 351..650 | 100 | <- | Minus |
arm_3R | 18359058..18359315 | 93..350 | 100 | <- | Minus |
arm_3R | 18359406..18359497 | 1..92 | 96 | | Minus |