UFO02907.5prime Sequence
1135 bp (1011 high quality bases) assembled on 2009-02-18
> UFO02907.5prime
CAGTCGACATGCCAGTGCAGCAAGTGCGTCCCGTGAGCACCTACGACAAC
TTGGGCGTCTCTCAGTCCAGGCAGCTGACGGCCGGAATGGCTGGCGAACC
GGAAACGGAAGTCGAAGTGGAGCTCAATGGCAGCCACACCAGCCATAGCA
TAGCCGCTGTGAAGGCGGCTCTGAACGATGCCAAGTCCAAGTTCTTCGGC
ATCAACAACTATGAGTCACCCATGGCCAGTAAGAGTGCAGCAGTGACGAC
GATTGCCAAACCGGAGCCAAGATATCAAAATGTTCCGCAACGCGACGAAC
TGCCGGCAGTGGCTGCTCCCGATCCTCCAGCGCAACCAGCACAGCCGACG
GCTCCAGTTAGCGATCATAGTAGGGCACTGCGCTATGCGACCACCTACGA
ACAGATTCCACTCAGCGACATGGAAGCACCGCAGGCATCGCAGGCCGTCT
ACATGAGCACCACAGTGCCGCAGAACATGAAGGGCATGAAGATCGCCGGA
CGACATACGCCAACTCGCAACAGCCTCAGGCACAGCCGCATGATCGTTGT
CAATCACAAAAACCACGACAGTCTCCAGGCCACCAGGAATCTGAATATAT
CTCGCCAGCTTCTGGTTATGCAATTAGCTGTGGGCCTGTTCATCGTGGGT
CTTGCCGTTTGGATACTAATCCTAGCCCCCAATGCGTCCATATTGATCAA
TCCGTATCTGAGTGGATTGTCGCTGCTATTGGCCAGCATTGCGGGGCTCA
TACTGCTGCGAAGGGATCACAAGATCACGGAGCACAGACCGCAGACCAAT
AGTTGCTACAAGGTCCTGCTGGCCGAGTCGTATGTGTTCACTGGCCTGGC
GTTGATCTTCTGCTGCTTGGCCCTCGTCTGTGCGGCAATTGAGTTCGCGG
AGCTCATCTCATCCGCAGACGGAGATGTGACCAACATCGAGCTCATTGCT
TAGCTATCCACAATTGCACCTGCTGGCGCAGTGAGTGTTGCCACCTACTC
CTCCGAGGCTCCATGCATTGCAGTTGTCAGGAGAGGCGTCACAAAACGAT
GTTGTGCCGAGCTTCGGATCGAATGAAGTATCTGCCTCGCCCTCCTCAAT
GGGCGCTCAACTGGCATTGTGCCACATCTTATCAT
UFO02907.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:30:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1806-RB | 1582 | CG1806-RB | 263..1376 | 8..1111 | 5080 | 98 | Plus |
| CG1806-RA | 1648 | CG1806-RA | 329..1442 | 8..1111 | 5080 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:30:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12008269..12008705 | 8..444 | 2185 | 100 | Plus |
| X | 23542271 | X | 12009240..12009493 | 722..974 | 1125 | 98.8 | Plus |
| X | 23542271 | X | 12009023..12009174 | 571..722 | 760 | 100 | Plus |
| X | 23542271 | X | 12008768..12008898 | 442..572 | 655 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:30:21 has no hits.
UFO02907.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:03:27 Download gff for
UFO02907.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1806-RA | 323..1440 | 1..1111 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:26 Download gff for
UFO02907.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1806-RA | 325..1442 | 1..1111 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:29 Download gff for
UFO02907.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1806-RA | 325..1442 | 1..1111 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:29 Download gff for
UFO02907.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12008265..12008704 | 1..443 | 99 | -> | Plus |
| X | 12008770..12008896 | 444..570 | 100 | -> | Plus |
| X | 12009023..12009174 | 571..722 | 100 | -> | Plus |
| X | 12009241..12009572 | 723..1043 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:26 Download gff for
UFO02907.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11902298..11902737 | 1..443 | 99 | -> | Plus |
| arm_X | 11902803..11902929 | 444..570 | 100 | -> | Plus |
| arm_X | 11903056..11903207 | 571..722 | 100 | -> | Plus |
| arm_X | 11903274..11903605 | 723..1043 | 95 | -> | Plus |
