UFO02909.5prime Sequence
1143 bp (1055 high quality bases) assembled on 2009-02-18
> UFO02909.5prime
CAGTCGACATGCAATTCACGCTCCGTCATGTTGTTTCGGCAGTAGCCAAG
ACTCCTCTGCGCACCAATGCCGCCATTCTGGGTGCCCTCAACGCCCGCTG
CTACTCCAGCACCCACGAGGCGGACATCGTGGTGATTGGCTCCGGACCCG
GTGGCTATGTCGCCGCCATCAAGGCCGCCCAGATGGGCATGAAGACGGTC
AGCGTGGAGAAGGAGGCAACTCTGGGCGGCACCTGCCTGAATGTTGGCTG
CATTCCCTCAAAGGCGCTGCTGAACAACTCCCACTACTACCACATGGCCC
ACTCCGGTGATCTGGAGAAACGTGGTATTAGCTGCGGCAGCGTTAGCCTG
GATCTGGAGAAGCTTATGGGTCAAAAGTCCAACGCCGTGAAGGCTTTGAC
CGGTGGCATTGCCATGCTTTTCAAGAAGAACAAGGTCACACAGCTGACGG
GCTTCGGCACCATCGTCAATCCCAACGAGGTGGAGGTTAAGAAATCCGAC
GGCTCCACGGAGACTGTCAAGACCAAGAACATCCTCATCGCCACCGGCTC
GGAGGTTACCCCCTTCCCTGGCATTGAAATCGACGAGGAAGTTATTGTGA
GCAGCACTGGCGCCCTGAAGCTGGCCAAGGTGCCCAAGCATCTGGTTGTC
ATCGGCGCCGGTGTCATTGGCCTGGAGCTGGGTTCGGTATGGTCGCGTCT
GGGCGCTGAGGTCACTGCCATTGAGTTCATGGATACGATCGGCGGCGTGG
GCATCGATAACGAAGTCTCCAAGACGTTCCAAAAGGTGCTCACCAAGCAG
GGTCTTAAGTTCAAGCTGGGCACCAAGGTGACGGCTGCCTCTCGCAGCGG
CGACAACGTCACCGTGTCCGTGGAGAACGCCAAGTCTGGCGAGAAAGAGG
AGATCCAGTGCGACGCCCTGCTGGTCAGTGTTGGACGTCGTCCCTACACC
GAAGGTTTGGGTCTGGAGGCCGTGGGCCATTGTTAAGGATGACCGCGGCA
GATCCCCGTCAACGCCACTTTCCAACTGTGGGTGCCCAATTATTTACGCC
ATCGGCGACTGCATCCACGACCCATGTTGGCGCACAGCTGAAGAATGAGG
GCCTCTCTTCACATTGGAGGCATTCAACGCGCGGCCCCTCAGT
UFO02909.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:46:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7430-RB | 1903 | CG7430-RB | 161..1259 | 8..1105 | 5300 | 99.2 | Plus |
| CG7430-RA | 2252 | CG7430-RA | 281..1379 | 8..1105 | 5300 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:46:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17847545..17848074 | 49..578 | 2650 | 100 | Plus |
| 3L | 28110227 | 3L | 17848138..17848645 | 579..1086 | 2275 | 98.2 | Plus |
| 3L | 28110227 | 3L | 17847196..17847238 | 8..50 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:46:41 has no hits.
UFO02909.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:03:26 Download gff for
UFO02909.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7430-RA | 277..1379 | 1..1105 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:39:21 Download gff for
UFO02909.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7430-RA | 277..1379 | 1..1105 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:28:46 Download gff for
UFO02909.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7430-RA | 277..1379 | 1..1105 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:28:46 Download gff for
UFO02909.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17847192..17847238 | 1..50 | 94 | -> | Plus |
| 3L | 17847547..17848074 | 51..578 | 100 | -> | Plus |
| 3L | 17848138..17848654 | 579..1093 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:39:21 Download gff for
UFO02909.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17840647..17841174 | 51..578 | 100 | -> | Plus |
| arm_3L | 17840292..17840338 | 1..50 | 94 | -> | Plus |
| arm_3L | 17841238..17841754 | 579..1093 | 98 | -> | Plus |
