UFO02912.5prime Sequence
1021 bp (944 high quality bases) assembled on 2009-01-24
> UFO02912.5prime
CAGTCGACATGGCGCGTCTGCGGCTTCTAATCGGTCTTATATTCTGCCTT
GCGATCAGCTTGGATTCGGTGCTTAGTGCCCCAGTGATCAGCCAGATCAG
CAAGGACGTGGTGGCCAGTGTGGGCGACTCTGTGGAGTTCAACTGCACCG
TGGAGGAGGTGGGACAGCTCTCGGTGAGCTGGGCCAAGCGTCCCAGCGAG
TCGGACACCAACTCGGTGGTGCTCTCCATGCGGAATATCCTCAGTCTGCC
CGACCAGCGGTACAACGTAACGGTCACCGAAGGACCCAAGACCGGAAGTG
CCATTTACACCTTCCGCATTCAGAACATCGAAGTCAGTGACATGGGTCCG
TACGAGTGTCAGGTGCTTGTTTCGGCCACGGAGAAGGTGACCAAGAAGCT
GAGCCTGCAGATCAAGACCCCGCCGGTGATTGCGGAGAACACCCCCAAGA
GCACCCTGGTGACAGAGGGACAGAATCTGGAGCTGACCTGCCATGCCAAT
GGCTTTCCCAAGCCTACGATCTCCTGGGCCCGCGAGCATAATGCAGTGAT
GCCTGCCGGTGGCCATTTGCTGGCCGAACCAACTCTCCGGATTCGTTCCG
TGCACCGGATGGATCGCGGCGGCTACTACTGCATCGCGCAGAACGGAGAG
GGCCAGCCGGACAAGAGGTTGATCCGGGTCGAAGTGGAGTTCCGTCCGCA
GATTGCCGTCCAGAGGCCCAAGATCGCCCAAATGGTGTCTCATTCCGCGG
AGCTGGAGTGCTCCGTGCAGGGCTACCCGGCTCCGACTGTAGTTTGGCAC
AAGAATGGCGTGCCCCTGCAGTCTAGCCCGGCACCACGAGTGGCCAACAC
CGCCTCCTCTTCGGGAACCACACCTCTGGTGCTGCGCATCGATAGCGTGG
GCGAGGAGGACTTTGGGGACTACTACTGCATGCACCATAGCTGGGACCGC
GATGGCGCGACTGCATCTTCTTCAGAACGTCATCCAGTGCCCTCTTGTCG
GCAGCTTTTCTAGACTATTTC
UFO02912.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:29:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ama-RC | 1526 | CG2198-RC | 102..1103 | 6..1000 | 4610 | 98.2 | Plus |
| Ama-RA | 1542 | CG2198-RA | 118..1119 | 6..1000 | 4610 | 98.2 | Plus |
| Ama-RB | 1833 | CG2198-RB | 409..1410 | 6..1000 | 4610 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:29:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6763837..6764761 | 6..930 | 4425 | 99 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:29:04 has no hits.
UFO02912.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:03:30 Download gff for
UFO02912.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ama-RC | 98..1101 | 1..1000 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:43 Download gff for
UFO02912.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ama-RB | 407..1410 | 1..1000 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:57 Download gff for
UFO02912.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ama-RB | 407..1410 | 1..1000 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:57 Download gff for
UFO02912.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6763830..6764838 | 1..1000 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:43 Download gff for
UFO02912.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2589552..2590560 | 1..1000 | 97 | | Plus |
