UFO02921.5prime Sequence
1132 bp (1026 high quality bases) assembled on 2009-02-18
> UFO02921.5prime
CAGTCGACATGCGTCCGTTCTCCGGCAGCGATTGCCTTAAGCCCGTCACC
GAGGGCATCAACCGGGCGTTCGGCGCCAAGGAGCCTTGGCAGGTCGCCAC
CATCACGGCCACCACGGTGCTGGGAGGCGTCTGGCTCTGGACTGTGATCT
GCCAGGATGAAAATCTTTACATTCGTGGCAAGCGTCAGTTCTTTAAGTTT
GCCAAGAAGATTCCAGCCGTGCGTCGTCAGGTGGAGACTGAATTGGCCAA
GGCCAAAAACGACTTCGAGACGGAAATCAAAAAGAGCAACGCCCACCTTA
CCTACTCGGAAACTCTGCCCGAGAAGGGACTCAGCAAGGAGGAGATCCTC
CGACTGGTGGATGAGCACCTGAAGACTGGTCACTACAACTGGCGTGATGG
TCGTGTATCTGGCGCGGTCTACGGCTACAAGCCTGATCTGGTGGAGCTCG
TCACTGAAGTGTACGGCAAGGCCTCCTACACCAATCCCTTGCACGCAGAT
CTTTTCCCGGGAGTTTGCAAAATGGAGGCGGAGGTAGTGCGCATGGCATG
CAACCTGTTCCATGGAAACTCAGCCAGCTGTGGAACCATGACCACCGGCG
GCACCGAATCCATTGTAATGGCCATGAAGGCGTACAGGGATTTCGCTAGA
GAGTACAAGGGAATCACCAGGCCAAACATCGTGGTGCCTAAGACGGTCCA
CGCGGCCTTCGACAAGGGTGGTCAGTACTTTAATATCCACGTGCGATCCG
TGGATGTAGATCCGGAGACCTACGAAGTGGACATTAAGAAGTTCAAACGT
GCCATTAATAGGAACACGATTCTGCTGGTTGGGTCTGCTCCAAACTTCCC
CTATGGAACCATAGATGATATCGAAGCTATCGCCGCTTTGGGCGTTAAGT
ACGACATTCCCGTGCACGTGGACGCCTGCCTGGCAGCTTTGTGTGCCTTG
GTCGCAACGTCGGCTATAAGCTGCGTCCTTCGACTTGAGTCAAGGGAGTG
ACCAGTATCTCGCTGAATACCCACAAGTATGTTTCGCGCCCAAGGATCAT
CGGTGATCTACTCGAACAGAGTCAAGGACATCAGTCACTGTGACTACTGA
CTGGCCTGGCGCCGGGTATGGTTTCTCCCCAG
UFO02921.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:51:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sply-RA | 2077 | CG8946-RA | 161..1297 | 9..1129 | 5050 | 97.3 | Plus |
| Sply-RB | 2014 | CG8946-RB | 98..1234 | 9..1129 | 5050 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:51:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17089714..17090375 | 824..163 | 3280 | 99.7 | Minus |
| 2R | 25286936 | 2R | 17091359..17091512 | 162..9 | 740 | 98.7 | Minus |
| 2R | 25286936 | 2R | 17089343..17089659 | 1123..824 | 670 | 89.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:51:38 has no hits.
UFO02921.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:03:18 Download gff for
UFO02921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sply-RA | 154..1300 | 1..1132 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:57:14 Download gff for
UFO02921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sply-RB | 92..1238 | 1..1132 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:21:07 Download gff for
UFO02921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sply-RB | 92..1238 | 1..1132 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:21:07 Download gff for
UFO02921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17089334..17089658 | 825..1132 | 91 | <- | Minus |
| 2R | 17089714..17090375 | 163..824 | 99 | <- | Minus |
| 2R | 17091359..17091516 | 1..162 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:57:14 Download gff for
UFO02921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12976839..12977163 | 825..1132 | 91 | <- | Minus |
| arm_2R | 12977219..12977880 | 163..824 | 99 | <- | Minus |
| arm_2R | 12978864..12979021 | 1..162 | 96 | | Minus |
