UFO02931.5prime Sequence
1131 bp (1048 high quality bases) assembled on 2009-02-18
> UFO02931.5prime
CAGTCGACATGGCGCCCGTGAGCGGCTGTTTGCCCACCGCCACCCACTCG
CTGCAGGACATGAGTGCTGCCGCCGCGGCAATCGCTCTTGACATGAAGCC
CAAGTTGGAGCCCCACCCCCTGGCCGCCGCAACTGCCATGCCCTCTCAGA
AGATAAAGAAATTGGTTCGGCGCAACGCCTCCGACAAGCTGAAGCTCATC
CAAATGGTGCACGACAATCCAATTCTCTGGGACTCCCGTCTCCCGAATTT
CAAGGGCGCCGAAGAAGAAAAGAACCGAGCCTGGGAGCACATAGGCCGCG
AGTTCAACGCTCCCGGGCGTCGCGTTGCACGGGCCTTCAAGTCCTTGAGG
GAATCCTACCGCCGTGAACTCGCCCACGTCAAGCTAATGGGCAATGGCTT
CAAGCCCAAGTGGAGTCTCTATGAGGCCATGGATTTCCTGCGCGATGTCA
TCAGAGAACGAAAGGGCGCTTCGCATGCAACCGATCTAAGCCTGACAACC
TATGGCCATATTAACAATAACAACAACAACAACAACAACAGTAACAGCTT
GGCTGCAGGGGGAAAGGCAATGACCCTGAAGCTGTCCAATTCCTTTAACG
AGTCCGCCTCAGTGTTAAATCTCTCAAAGTGCTCCTCGCTCAATGTAAGC
GACGATCACTACTATTGCGACTACTATGTGAAGCCGGAGCTGGATCTCTC
GGTGGGCGGTGGGGCCGGAAGTAGCACAAGTGGGAGTAGCTCCGGCGGCG
GGCCACTTCCTCTGCCCGCTCACCAGGCTCACAACGACAGTCGGGTGAGC
TCAACGAGAAACGAGCAAAGGGCACAGCATCACAGCTATGAAGACATGGA
CGACAGCTCGATACGCAGCGGGGACGAAGATATCGCCCACGCATCCGACG
TAGTGGAGGAGTTGGATGCCATCGATGCAGATTTCCCTTATCCTCTGATT
CTGGATTCCAACTCCCGCGGTAGCCCCAATGTTGGTGTGGACGATGTGGT
CATGTCCCGCAAGCCTCGCCGTAACGTCGATCAGATGTTTTGGAAGGAAG
GAAACGGTTCACGGGGATGCGTTATCGAATGGTGACGACCTACGAAGAAC
AAATGGCTGCACAGGACCGGCATCTCCGGCA
UFO02931.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:22:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mes2-RB | 2302 | CG11100-RB | 131..1251 | 9..1131 | 5355 | 98.8 | Plus |
| Mes2-RC | 2208 | CG11100-RC | 191..1157 | 163..1131 | 4585 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:22:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22950532..22951197 | 464..1131 | 2905 | 97 | Plus |
| 3L | 28110227 | 3L | 22946270..22946571 | 163..464 | 1510 | 100 | Plus |
| 3L | 28110227 | 3L | 22945787..22945940 | 9..162 | 770 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:22:45 has no hits.
UFO02931.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:05:30 Download gff for
UFO02931.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mes2-RB | 122..1248 | 1..1130 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:49 Download gff for
UFO02931.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mes2-RB | 124..1250 | 1..1130 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:59:28 Download gff for
UFO02931.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mes2-RB | 124..1250 | 1..1130 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:59:28 Download gff for
UFO02931.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22945780..22945940 | 1..162 | 97 | -> | Plus |
| 3L | 22946270..22946570 | 163..463 | 100 | -> | Plus |
| 3L | 22950532..22951196 | 464..1130 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:49 Download gff for
UFO02931.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22938880..22939040 | 1..162 | 97 | -> | Plus |
| arm_3L | 22939370..22939670 | 163..463 | 100 | -> | Plus |
| arm_3L | 22943632..22944296 | 464..1130 | 98 | | Plus |
