UFO02934.5prime Sequence
1139 bp (1042 high quality bases) assembled on 2009-02-18
> UFO02934.5prime
CAGTCGACATGATAGGATTCTCGGCATCATTCCTCATGATGGCCGCCATC
TGCGAGTTGTCCAGCTACTATGTGGTCAATCCCTGGTGGTACATCATGGC
TGCAGTGCCCCACTCCCTGCTCGGTGGCAATTGCGTCTTCTCGGTGGCCG
CCTTCTGCTTCATCTCGGACATCACGGATTGCAAGTCGCGTCCGTACCGC
ATGATCTTCATGGAGTCGCTTTTCTTTATTGGACTGACAAGTGGATCTCT
GCTCTCTAGCTTTGTGTACGCGGCTGTGGGATCAGCGGCGACCATTGGGA
TTTCTGGCTGCATCGTTACTTTCGCAACGCTCTTTATCATCTTCTTTGTG
CCGGAGAGCTTGCACTTCCATAAGGAACAGGAAACGAAGAATGCGATAAC
TGCAAATGTCGAAAAGGAGTGCATCGACAGCAAAGTGCCTATAACCGCCT
GTGACCTCCAGTTGGACCGCGTTGCGATTGACTGCCCGCCGAACTTCATG
AACGATGAGGAGCCAGGGAAGGATAAGAGGATGGAGCTGCCCACACCGGC
AACGCCTGCGATGAGCTTCGACGACGACCTGTTGGCGAAGTACGTGGAGC
GGCTGCCACAGAAGGCGGAGGAGCGCAAGCGCCAGGAGGCGGAAGAGCAG
GCCAAGAAGGCGGGTCTGTTCAGTATGGTACACATCAGGGACATGATCAG
CACCTGCTTCAAGCGTCGCGATCATCACGCGCGCGCCATCATCTGGCTGG
TTACGCTGGCCATGTTTCTGTCCATCTTTGTATTCGATGGAGTGATGACA
GTGATGTACCTATTCGTGCGCGAGAAATTCCACTGGACTGTGCGGGACTA
CACATTCTTTGAAACGGTCAGCCACCTGGTGCCCATGATTGGCGCACTCA
TTGGTTTCCTTATTCTGCGAAGGTCTTTCGCCTGTCGGTGGTGACCCTGG
CACTGCTTGCGTTCTTTTCGGAGATTCTGAATATCTGGCCAAGGGCTTTG
CAACGATGCCCTGGCACATGTTACCTTTCGGTGACTGGGCGGTCTCCGCT
CCATCTTCAGGCCCCATGTTGCGCACAATAGTATCGAAACATAGTGCCTC
CCTTCGGGATACTGGCAAGAAATTTTCTCCACTCAGAAA
UFO02934.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8008-RB | 2680 | CG8008-RB | 655..1775 | 8..1131 | 5205 | 98.1 | Plus |
| CG8008-RA | 2748 | CG8008-RA | 723..1843 | 8..1131 | 5205 | 98.1 | Plus |
| CG15553-RC | 1784 | CG15553-RC | 511..668 | 58..215 | 265 | 78.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9159533..9160305 | 786..14 | 3835 | 99.7 | Minus |
| 2R | 25286936 | 2R | 9159340..9159473 | 919..786 | 670 | 100 | Minus |
| 2R | 25286936 | 2R | 9159087..9159269 | 1103..921 | 560 | 93 | Minus |
| 3R | 32079331 | 3R | 31100366..31100486 | 178..58 | 245 | 80.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:12:24 has no hits.
UFO02934.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:03:17 Download gff for
UFO02934.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8008-RB | 652..1765 | 4..1120 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:06:37 Download gff for
UFO02934.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8008-RA | 721..1834 | 4..1120 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:32 Download gff for
UFO02934.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8008-RA | 721..1834 | 4..1120 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:41:32 Download gff for
UFO02934.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9159078..9159267 | 923..1115 | 92 | <- | Minus |
| 2R | 9159336..9159472 | 787..922 | 99 | <- | Minus |
| 2R | 9159533..9160305 | 14..786 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:06:37 Download gff for
UFO02934.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5046583..5046772 | 923..1115 | 92 | <- | Minus |
| arm_2R | 5046841..5046977 | 787..922 | 99 | <- | Minus |
| arm_2R | 5047038..5047810 | 14..786 | 99 | | Minus |
