UFO02935.5prime Sequence
1111 bp (1019 high quality bases) assembled on 2009-02-18
> UFO02935.5prime
CAGTCGACATGACAGAAGGACATGAAAGCGACTTCTTAGTAACAGTACGC
GCACAGGTAATGACCAGAGACGAGAGCACCGAGGGCTGGCTTCCGCTGGC
CGGGGGTGGCCTGGCCAATGTTTCGATCCGGAAGCGGGCTAGGCTATCCC
CATTGGCATCGGGTCATGACTACATCATCTACGGGCAGAGGATATCCGAT
CAGAGCGTCATCTTGAGCTGTGTGATCAATCGTGATCTGAAGTATTACAA
AGTAATGCCCACATTTCATCATTGGCGCGCAGGGAAGCAGCGGAATGGAC
TCACATTTCAAACGGCCGCCGATGCGCGAGCCTTTGACAAGGGCGTCCTG
CGCGCCTACAACGAGCTGATCGATGGACTGGCCAAATCGAATCCAACGAT
AATATGCCCACCGCTAACCAAATATGATTCGGTTGGCGAAGATGATGTAT
TCATGACCCTGGACTTACCTGTGGAGAGCGAGAGTTTACAAAAGATCCAT
TCAAGCCCCGAGGGCAGCGAGAAAAGTCACAAGAGCGTCAGCAACAACTC
CGACTCGGAGAAGCTGCCTCCGCCGCCCATTCACTACATATCCACGGACA
AAACATCGGCCACCACGTCGCCGCCAGACGCACCGCCCGCTTCTGCTGCT
CCATCGCCGGCGACGGCCGGCCAGATAGCGGCCAGTGAGAACTACTCGTA
CGTGACGCTGACGGCGGTGCACCACGACTACAACTATCCGGTGGTGGACC
AGCCGGTGGGGGCGCAGGTGCTCAATGCTCGCAGGGAGTCGATCAGTGCA
CTAAAGAAGCGCAACGCTCTGGAGGCGGCGCAGCGATGGCGGCGGCTCAG
ACGGCGGCGGGTGGTGGACTGGCCTGTCGCGACGGCGGATCGGGAAAGCC
ACTGCACAAGCCGAACGTATCCGACATACTGAAGAAGGAGACGCGCCTGC
GATGCCGCTACTGCCACGAGCTGTACAAGCGGAGGACTTCAATCGGCGGG
GCGCCTGCGAATATGGCCCCGGATGGCGTTTCCGCAACGGCTACGAGTGC
ATCTCCTGGGAATGGCTGTGCCCGGTGGCATTGATCCTACCCACTGTCAA
TGAAGCGAGTC
UFO02935.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:28:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spred-RC | 4167 | CG10155-RC | 493..1554 | 8..1074 | 5060 | 98.7 | Plus |
| Spred-RA | 2657 | CG10155-RA | 493..1554 | 8..1074 | 5060 | 98.7 | Plus |
| Spred-RB | 2525 | CG10155-RB | 790..1422 | 437..1074 | 2930 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:28:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14762259..14762796 | 1074..532 | 2300 | 97.4 | Minus |
| 2R | 25286936 | 2R | 14764058..14764239 | 208..27 | 895 | 99.5 | Minus |
| 2R | 25286936 | 2R | 14763830..14763999 | 376..207 | 835 | 99.4 | Minus |
| 2R | 25286936 | 2R | 14762919..14763075 | 531..375 | 785 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:28:50 has no hits.
UFO02935.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:03:16 Download gff for
UFO02935.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spred-RA | 492..1559 | 8..1081 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:35 Download gff for
UFO02935.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spred-RA | 493..1560 | 8..1081 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:50 Download gff for
UFO02935.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spred-RA | 493..1560 | 8..1081 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:50 Download gff for
UFO02935.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14762919..14763074 | 376..531 | 100 | <- | Minus |
| 2R | 14763831..14763999 | 207..375 | 99 | <- | Minus |
| 2R | 14764060..14764237 | 29..206 | 99 | <- | Minus |
| 2R | 14768004..14768024 | 8..28 | 100 | | Minus |
| 2R | 14762253..14762796 | 532..1081 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:35 Download gff for
UFO02935.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10649758..10650301 | 532..1081 | 97 | <- | Minus |
| arm_2R | 10650424..10650579 | 376..531 | 100 | <- | Minus |
| arm_2R | 10651336..10651504 | 207..375 | 99 | <- | Minus |
| arm_2R | 10651565..10651742 | 29..206 | 99 | <- | Minus |
| arm_2R | 10655509..10655529 | 8..28 | 100 | | Minus |
