UFO02936.5prime Sequence
1066 bp (1043 high quality bases) assembled on 2009-02-18
> UFO02936.5prime
CAGTCGACATGCTCTGCCGACTGGTGGGAAACAGGAGTTTGGGTGCACGA
TATACCGCCTCCATCAAGGCTATTGCGTGCTACTCCACGTCGGGAAAACA
GCGGAACGGCAAGATCTACGAGTCGGCCATAGATGCTGTGGCCGATGTGC
AGGATGGTGCCCAGATCCTGTTCGGCGGATTCGGAATCTGCGGCATTCCG
GAGAAGATGATCAACGCGCTCAAGCAGAAAGGAGTCAAGAACATCACTGG
CGTTTCCAACAATGGAGGTGTGGACGACACTGGTCTGGGTGTCCTGATCA
AGCAGAAGCAGGTGTCCAAGGTAATTGGCTCCTATGTCGGCGAAAACACG
GAGTTGGTGCGTCAATATCTGGAAGGAGAACTGGCCGTGGAACTGACTCC
CCAAGGCACCCTAGCGGAAAAGATCCGCGCTGGAGGAGCCGGCATTCCGG
CCTTCTACACGCCCACTGGCTACGCCACTCTTGTCCAGGAAGGCGGAGCA
CCCATTAAGTACTCCAAGGATGGCAAAGTGGAAATATCCAGCGAAAAGAA
GCCCGTGAAGGAGTTCAACGGAAAGAACTACGTGATGGAGGAGTCCATCT
TCGCAGACTTTGCCTTTGTCAAGGCCCAGAAGGCCGATCCCTTGGGCAAT
CTGGTGTTCAACAAAGCTGCCAGAAACTTCAATGCACCCATGTGCAGGGC
TGCCAAAATCACCGTGGCCGAAGTGGAGGAAATCGTGCCCATCGGAGCCC
TTTCTCCCGATGAGATCCATGTGCCCGGCATCTACATTAACCGCATCTTC
AAGGGCACCAACTACAACAAGCGTGTGAACGCTTGCGCATCACGGAACCC
AAGGATCCCAGCAACCCGCTCCTCCACCAATCCCGCCCAGGTTTTACGTG
AGCGCATTGCCCGTCGAGTGCTCTTGAGTTCACGACGGCATGTATGCCAT
CTGGGCATTGGCATTCCCGTGCTCTCCTCCACTACATCCCAAGGACATGA
ACGTGATGCTGCAGTCGGAGACCGGATCCTGGGGCCTGGGACCCCTCCCA
CCAAGGAATAGTGGAT
UFO02936.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:14:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SCOT-RA | 1768 | CG1140-RA | 92..1159 | 9..1066 | 4985 | 98.5 | Plus |
| SCOT-RC | 2006 | CG1140-RC | 388..1397 | 67..1066 | 4695 | 98.4 | Plus |
| SCOT-RB | 1966 | CG1140-RB | 349..1357 | 68..1066 | 4690 | 98.4 | Plus |
| SCOT-RC | 2006 | CG1140-RC | 92..151 | 9..68 | 300 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:14:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1965328..1966119 | 266..1049 | 3455 | 98.1 | Plus |
| 3L | 28110227 | 3L | 1965073..1965275 | 67..269 | 1015 | 100 | Plus |
| 3L | 28110227 | 3L | 1964550..1964610 | 9..69 | 305 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 23:14:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2478..2521 | 776..819 | 121 | 75 | Plus |
UFO02936.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:03:15 Download gff for
UFO02936.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1140-RA | 73..1148 | 1..1066 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:21:32 Download gff for
UFO02936.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1140-RA | 84..1159 | 1..1066 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:54:29 Download gff for
UFO02936.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SCOT-RA | 84..1159 | 1..1066 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:54:29 Download gff for
UFO02936.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1964542..1964609 | 1..68 | 94 | -> | Plus |
| 3L | 1965075..1965273 | 69..267 | 100 | -> | Plus |
| 3L | 1965330..1966138 | 268..1066 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:21:32 Download gff for
UFO02936.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1964542..1964609 | 1..68 | 94 | -> | Plus |
| arm_3L | 1965075..1965273 | 69..267 | 100 | -> | Plus |
| arm_3L | 1965330..1966138 | 268..1066 | 98 | | Plus |
