UFO02938.5prime Sequence
1139 bp (1027 high quality bases) assembled on 2009-02-18
> UFO02938.5prime
CAGTCGACATGCTGCCCCTGCGATGCAGTTGGTCCTTTGCCCGGGCCAAC
TATAGCACCAAAAAGGAACTGGTGACTCGCTACAGCGGCGATTTCCCCGA
GAAACTGCTCAACCGGAAGCAAAAGGTTCCCACTCACATGTACATTGCAA
ATTCGGAGGCTGCTGCAAGGATTAACCAGTACCTGGAGCCCCATTTCCAG
AGCTCCGGTTGCGATACCGTGATGGAACTCAATTCCGGTGCTGGGTACTT
TACCCGGCATCTGTTGGACAGGGAATCCCAGTTTCGACGCATAATTCTGC
TTGAGAGCATGGATCACTTTATGCCCAAAATCCAGGAGCTACACACGCTA
TATCCGGAACGTGTGAAGGTGCGCCAAGGAGACTTTGTGAACCTGTGGAA
GTTGGTGTACATGGACAAAATGGACGGTGGTTCCAGGGTGGCGGATCTCC
TGAGTGATGTGCCCCAGAAAGCGTTTACAGATGATATCAACATGCTAGTC
TTCGGCGCCGTGGGCTCCTATCCATTCTTCAAGCACTTGATCAACTCCCT
CATTTTTCAGACCAGCCTTTTCAACCTTGGACGCTGTGAGATGATCCTCG
CCATGCCGCCACCCATATACATACATCTCACCTGCAACAACGAGATTGGC
TACCTCATTTACCGATCGACCAGCGTACTGTTTCAAATTCTGTTTGAGCA
CAAATTCATAGCCAAGGTGCCGCGCGAGGATTTTCTACCTCAGCAGATGG
CCTATAGCCCCACCAAGAGTAGCAAGTTGGGTAAAGTGCAGTCCATCAAT
CCCGAGTACTTGTACTTGGTGAAATTCACTCCGCGCCGCAATCTTCATGA
GCTGTGCCAGTCGCAGATCTACCCGCTCTCTGGTTCTTCATTAAGCAGAA
CTATGTAGCCGACGAAACAGATATACCCAATTTAGAAAGTGGTTCCCGGC
TGTGACCTCGGCTTATCATTAATCCGAAGTCCTCGAGTCGTACACCCATC
TATCCAGATGAATTGCCCAAGAAACTACACAGTACCCGTGCCAGAGTACT
ACATGGAGCACAGAAACTACTATCCCGGCATCACATCTTACCACACAGTC
GGAATCTTCTGCCCAAGTCCGAATTCTGAGGCATTAGTC
UFO02938.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:22:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mtTFB2-RA | 1512 | CG3910-RA | 96..1227 | 9..1129 | 5115 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:22:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10045669..10046143 | 9..483 | 2375 | 100 | Plus |
| 3R | 32079331 | 3R | 10046398..10046714 | 624..936 | 1390 | 98.1 | Plus |
| 3R | 32079331 | 3R | 10046196..10046336 | 483..623 | 705 | 100 | Plus |
| 3R | 32079331 | 3R | 10046782..10046930 | 941..1083 | 405 | 92.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:22:36 has no hits.
UFO02938.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:05:28 Download gff for
UFO02938.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mtTFB2-RA | 91..1205 | 6..1107 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:43 Download gff for
UFO02938.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mtTFB2-RA | 93..1207 | 6..1107 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:59:24 Download gff for
UFO02938.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mtTFB2-RA | 93..1207 | 6..1107 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:59:24 Download gff for
UFO02938.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10045666..10046143 | 6..483 | 99 | -> | Plus |
| 3R | 10046197..10046336 | 484..623 | 100 | -> | Plus |
| 3R | 10046398..10046714 | 624..936 | 98 | -> | Plus |
| 3R | 10046776..10046955 | 937..1107 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:43 Download gff for
UFO02938.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5871388..5871865 | 6..483 | 99 | -> | Plus |
| arm_3R | 5871919..5872058 | 484..623 | 100 | -> | Plus |
| arm_3R | 5872498..5872677 | 937..1107 | 91 | | Plus |
| arm_3R | 5872120..5872436 | 624..936 | 98 | -> | Plus |
