UFO02939.5prime Sequence
1121 bp (1017 high quality bases) assembled on 2009-02-18
> UFO02939.5prime
CAGTCGACATGTGGTGGCTACTTCTTTTGCTGTCCCTAATTGCGCCGTCG
TGGCAGGAGAATGCCACAGTGATCAATCCAAGTTATGTGACCAAAGCTGG
TTGTGAGGCATTGGTCAAGGAACCAAATCTCTGCGAGTGCCAGGAGCAGG
AGATCAAGTGCGAGAACCTTCAATTGCACAGTGATAATTTGCAGTTATAC
GGCATTAGCTGTAGTATATTCGATGCCAGGGGATTCGGCTATATACCACC
GCTTAAGGTGGGCAATATCGGTTCCCTGATCGTTCAAAACTGTGCCATAC
CAAATGCAGAAAGCATCAAATACTTGCTCAGTAAGCTGGGTGTTAGCAAC
TACACCGAACTGGAGATCTTCAACTATTTCGATCCCAAGAAAACGGATCG
AGGCGAGGTCCTGCAGCAACACTACACGGATCACGAGAGTCTGAAGAAAG
TATCCATCATTGGATTCAAGTCAACACTGCCTGAAAATTTTCTTGAAAAC
CTGCCGGCACTACAACAACTCTCCTTAAAGGGAAGCAGTGATTTGCCCGG
TAACATTTTGCATCCTTTGAAAAATCTAACCCATTTGGAAATTGTGGTCA
AGAATTTGGGCAAGGTGTCGGGTGCAATATTTGCAAAGCAATCGAAGCTA
AAACATCTGATGATCGACTGCGATGCCAAGAACAGTAGTGTCGAAATGTC
CGCTTTTGGACCCCAAGAACTCTGGCACATGACCGAACTTCAGTCGATCG
AGCTCTTCAATTGCGGTGATAATGTGCCAACCGAGTTGTTCTGGATGTCG
GAGCAATTGGCATACATTGGAATAAGGAGCAACATCAGCTATTTGAGCAA
GGACTTCCTTAAGTGCAAAGAACTGCTCACCTTAAGATTGGAAAGAAACA
TATTGCCAGGCTGCCGATCAGCTTTTCAGAACACTCCCTTGATTTAGAGA
TTCACTGCGTTCAATAATTTGGATCGCATCAGAGCGTCTTTTGAAAGTTA
AAGAACTACAGTGCTGAACTGAGCACATCGATACCACAATGCCCTGAATG
CCTTTACTCATCCACTGCCCAATTCTACGTGGCAGCTCTTAGCGGCAAAT
GCGACTGTCTCGATCGAATGC
UFO02939.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:15:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5888-RB | 1727 | CG5888-RB | 34..1132 | 9..1082 | 4860 | 97.4 | Plus |
| CG5888-RA | 1881 | CG5888-RA | 188..1286 | 9..1082 | 4860 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:15:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16404945..16405924 | 979..9 | 4505 | 99 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:15:07 has no hits.
UFO02939.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:05:27 Download gff for
UFO02939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5888-RA | 180..1264 | 1..1072 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:21:59 Download gff for
UFO02939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5888-RA | 184..1268 | 1..1072 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:54:53 Download gff for
UFO02939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5888-RA | 184..1268 | 1..1072 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:54:53 Download gff for
UFO02939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16404939..16405928 | 1..984 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:21:59 Download gff for
UFO02939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16404939..16405928 | 1..984 | 98 | | Minus |
