UFO02940.5prime Sequence
1149 bp (1056 high quality bases) assembled on 2009-02-18
> UFO02940.5prime
CAGTCGACATGCCCGCCGCCGATGAACTGCAGTCGCCGTCCAGCGAAATG
GTCCTGCTGACCCCCAGCTCCGGCAATCCTCCCTCCAGCATTGCCCAACC
AGCGGCTAATCCTGCCGAGAAAGCTCAGTGTCGCGAGGGATCCGCCGAGT
CAGACAGCAGCAGGGTTGTGATCAAGAAGCAGCTGGGCCTCCTCGAAGGA
GTGGCCATCATCCTGGGCATCATCTTCGGATCCGGTATCTTTGTTTCTCC
GAAAGGCGTCATCCGGGAGGTGGAGTCCGTGGGCGCTTCGCTGGTCATCT
GGGTTCTCTGCGGACTGCTGTCCATGATTGGTGCTCTTTGCTACGCGGAA
CTTGGTACTGCCATACCAAAATCTGGGGGGGATTACGCGTATATCTTCGA
GGCCTACGGATCACTGCCGGCTTTCCTGTATCTCTGGGATGCCATGATGA
TATTCGTACCAACGACCAATGCCATTATGGGCCTGACCTTTGCCTCCTAC
GTGCTGGAACCCTTCTTCGGCGGAGCCTGTGAGATTCCCAAAATAGCGTT
ACAGCTCCTGGCAGCCATCACCATCTGCTTCCTAACCTACCTGAATTCGT
ACTACATGAAGGTGACCACCAAGATGCAAAACGTCATCATGTTCACCAAG
ATCGCCGCCCTGGTCTTGATCATCCTGGTAGGCCTGGTCTGGATGATGAT
GGGCAACGTGGAGAACTTCACGAGACCCTTTGATAACACTGAGACTGATC
CCGGCAAGATGTCGGTAGCCTTTTACTCCGGTATCTTTTCCTATGCCGGA
TGGAATTACTTGAACTTCATGACGGAGGAGCTCCGCGATCCATATCGCAA
CCTGCCGCGCGCCATTTACATCTCCCTACCTCTGGTCACCGGCATTTATG
TGCTGGCCAATGTGGCTTATCTGGCCGTGCTGTCGCCCCTCGGAGATGAT
CGCATCCATGCCATCGCTGGGACCTTTGGCGATAAGATTCTCGGGCGGGT
TTTCACTGATCATACCCCTCATGGTGGCCATATCTGCTTTGGGCGGCCTT
TCCGTCCCCATCATGACCTCCTCCCGCATCTTGCTTCTTGGGGGCCCGCA
ATGGACAATGGCGGGCGATTCGGGCGACATCAGCGTAAGAAGCTACACC
UFO02940.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:46:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gb-RB | 2190 | CG6070-RB | 106..1246 | 8..1149 | 5385 | 98.4 | Plus |
| gb-RA | 2635 | CG6070-RA | 551..1691 | 8..1149 | 5385 | 98.4 | Plus |
| JhI-21-RC | 2149 | CG12317-RC | 871..1032 | 768..929 | 255 | 77.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:46:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27110136..27110647 | 969..458 | 2465 | 99.6 | Minus |
| 3R | 32079331 | 3R | 27111271..27111720 | 457..8 | 2250 | 100 | Minus |
| 3R | 32079331 | 3R | 27109706..27109883 | 1149..971 | 555 | 91.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:46:32 has no hits.
UFO02940.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:05:26 Download gff for
UFO02940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gb-RA | 529..1676 | 1..1149 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:39:14 Download gff for
UFO02940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gb-RA | 544..1691 | 1..1149 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:28:40 Download gff for
UFO02940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gb-RA | 544..1691 | 1..1149 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:28:40 Download gff for
UFO02940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27109706..27109882 | 972..1149 | 91 | <- | Minus |
| 3R | 27110134..27110647 | 458..971 | 99 | <- | Minus |
| 3R | 27111271..27111726 | 1..457 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:39:14 Download gff for
UFO02940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22935428..22935604 | 972..1149 | 91 | <- | Minus |
| arm_3R | 22935856..22936369 | 458..971 | 99 | <- | Minus |
| arm_3R | 22936993..22937448 | 1..457 | 99 | | Minus |
